CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G09500.1	Thale cress	cytosol	73.89	94.31
CDY54380	Canola	cytosol	78.98	91.85
CDY67681	Canola	cytosol	79.62	89.93
CDY44711	Canola	cytosol	79.62	89.93
CDY41605	Canola	cytosol	77.07	88.32
TraesCS2D01G277700.1	Wheat	cytosol	68.15	87.7
KRH19753	Soybean	cytosol	68.15	86.99
KRH32348	Soybean	mitochondrion, nucleus	68.15	86.99
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	66.88	86.07
TraesCS2A01G278600.1	Wheat	cytosol, unclear	66.88	86.07
EES05110	Sorghum	cytosol	66.88	85.37
EES05112	Sorghum	cytosol	66.88	85.37
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	65.61	83.74
Zm00001d025160_P001	Maize	cytosol	65.61	83.74
Os04t0376000-01	Rice	cytosol	64.97	82.93
Os02t0503400-01	Rice	nucleus	64.33	82.11
CDX73982	Canola	mitochondrion	79.62	80.13
CDY24964	Canola	cytosol	71.97	77.93
CDY55408	Canola	cytosol	73.25	76.16
Zm00001d004349_P001	Maize	cytosol, plastid	49.04	74.76
Zm00001d053550_P001	Maize	cytosol	49.04	74.76
HORVU2Hr1G068120.2	Barley	cytosol	66.88	73.43
CDY10436	Canola	cytosol	71.34	71.79
CDY07652	Canola	cytosol	72.61	71.25
GSMUA_Achr4P30580_001	Banana	cytosol	69.43	70.78
GSMUA_Achr10P...	Banana	cytosol, plastid	68.79	69.68
Zm00001d004052_P001	Maize	cytosol	66.24	67.1
CDY04860	Canola	extracellular	71.97	66.86
GSMUA_Achr10P...	Banana	cytosol	68.15	65.64
CDY68399	Canola	cytosol	70.7	64.91
CDY07005	Canola	cytosol	57.32	58.82
GSMUA_Achr2P16120_001	Banana	cytosol	68.15	54.31
GSMUA_Achr8P02690_001	Banana	cytosol	52.23	53.59
CDX93266	Canola	mitochondrion	32.48	51.0
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.52	50.96

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:A0A078F0G6	UniProt:A0A078F0G6	EnsemblPlants:CDY07930
ProteinID:CDY07930	ProteinID:CDY07930.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00125132001
HAMAP:MF_00374	PFAM:PF00831	ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35
InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L29_CS	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EEEB3D	:

Description

BnaC03g35930DBnaC03g35930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F0G6]

Coordinates

chrLK031982:+:174188..175157

Molecular Weight (calculated)

18032.6 Da

IEP (calculated)

11.849

GRAVY (calculated)

-0.611

Length

157 amino acids

Sequence
(BLAST)

001: MGFIRPIKET RVSDTLSQRR VAAASGGTRV KIISMARIKV HELRDKSKSD LQNQLQDLKA ELALLRVAKV TGGAPNKLSK IKVVRKSIAQ VLTVTSQKQK
101: SALREAYKNK KFIPLDLRPK KTRAIRRRLT KHQLSLKTER EKKKEMYFPI RKYAIKV

Best Arabidopsis Sequence Match ( AT3G09500.1 )
(BLAST)

001: MARIKVHELR EKSKSDLQNQ LKELKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV SSQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35A60S ribosomal protein L35-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.