Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d025160_P001 | Maize | cytosol | 76.77 | 96.75 |
| Zm00001d016549_P001 | Maize | cytosol, mitochondrion, plasma membrane, plastid | 76.77 | 96.75 |
| Os02t0503400-01 | Rice | nucleus | 73.55 | 92.68 |
| AT2G39390.1 | Thale cress | cytosol | 70.32 | 88.62 |
| AT3G09500.1 | Thale cress | cytosol | 69.03 | 86.99 |
| VIT_00s0317g00130.t01 | Wine grape | cytosol | 69.03 | 86.99 |
| Zm00001d053550_P001 | Maize | cytosol | 57.42 | 86.41 |
| Zm00001d004349_P001 | Maize | cytosol, plastid | 57.42 | 86.41 |
| Bra009577.1-P | Field mustard | cytosol | 67.74 | 85.37 |
| Bra028867.1-P | Field mustard | cytosol | 67.74 | 85.37 |
| Bra034070.1-P | Field mustard | cytosol | 67.1 | 84.55 |
| AT3G55170.1 | Thale cress | cytosol | 67.1 | 84.55 |
| Bra001306.1-P | Field mustard | cytosol | 67.1 | 84.55 |
| Solyc04g010240.2.1 | Tomato | nucleus, plastid, unclear | 67.1 | 84.55 |
| PGSC0003DMT400078146 | Potato | cytosol | 67.1 | 84.55 |
| KRH10326 | Soybean | endoplasmic reticulum | 67.1 | 84.55 |
| Bra029771.1-P | Field mustard | cytosol | 67.1 | 84.55 |
| KRH22989 | Soybean | cytosol | 66.45 | 83.74 |
| Solyc06g075620.2.1 | Tomato | unclear | 66.45 | 83.74 |
| PGSC0003DMT400077604 | Potato | cytosol | 66.45 | 83.74 |
| KRH32348 | Soybean | mitochondrion, nucleus | 66.45 | 83.74 |
| KRH19753 | Soybean | cytosol | 66.45 | 83.74 |
| Solyc05g054810.2.1 | Tomato | cytosol | 65.81 | 82.93 |
| PGSC0003DMT400060449 | Potato | cytosol | 65.81 | 82.93 |
| KRH36218 | Soybean | mitochondrion, nucleus | 65.16 | 82.11 |
| KRG92967 | Soybean | cytosol | 65.16 | 82.11 |
| CDY54380 | Canola | cytosol | 67.1 | 77.04 |
| CDY41605 | Canola | cytosol | 67.74 | 76.64 |
| CDY44711 | Canola | cytosol | 67.1 | 74.82 |
| CDY67681 | Canola | cytosol | 67.1 | 74.82 |
| AT5G02610.2 | Thale cress | cytosol | 70.32 | 74.66 |
| CDY24964 | Canola | cytosol | 67.74 | 72.41 |
| VIT_06s0004g04020.t01 | Wine grape | cytosol | 68.39 | 71.62 |
| GSMUA_Achr4P30580_001 | Banana | cytosol | 70.97 | 71.43 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 70.32 | 70.32 |
| PGSC0003DMT400048945 | Potato | cytosol | 45.16 | 70.0 |
| CDY55408 | Canola | cytosol | 66.45 | 68.21 |
| CDY10436 | Canola | cytosol | 67.74 | 67.31 |
| CDX73982 | Canola | mitochondrion | 67.1 | 66.67 |
| CDY07930 | Canola | extracellular | 67.1 | 66.24 |
| GSMUA_Achr10P... | Banana | cytosol | 67.74 | 64.42 |
| CDY07652 | Canola | cytosol | 66.45 | 64.38 |
| CDY04860 | Canola | extracellular | 67.74 | 62.13 |
| CDY68399 | Canola | cytosol | 67.1 | 60.82 |
| Solyc01g010960.1.1 | Tomato | cytosol | 36.77 | 55.88 |
| CDY07005 | Canola | cytosol | 53.55 | 54.25 |
| GSMUA_Achr2P16120_001 | Banana | cytosol | 68.39 | 53.81 |
| GSMUA_Achr8P02690_001 | Banana | cytosol | 51.61 | 52.29 |
| Bra000131.1-P | Field mustard | cytosol | 67.74 | 51.47 |
| GSMUA_Achr9P03110_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 66.45 | 49.52 |
| CDX93266 | Canola | mitochondrion | 31.61 | 49.0 |
Protein Annotations
| Gene3D:1.10.20.90 | Gene3D:1.10.287.310 | EntrezGene:100282013 | MapMan:17.1.2.1.35 | UniProt:A0A1D6ED46 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | HAMAP:MF_00374 | ProteinID:ONM18224.1 | PFAM:PF00831 | PANTHER:PTHR13872 |
| PANTHER:PTHR13872:SF36 | InterPro:Ribosomal_L29/L35 | InterPro:Ribosomal_L29/L35_sf | SUPFAM:SSF46561 | TIGRFAMs:TIGR00012 | UniParc:UPI000842B074 |
| EnsemblPlantsGene:Zm00001d004052 | EnsemblPlants:Zm00001d004052_P001 | EnsemblPlants:Zm00001d004052_T001 | SEG:seg | : | : |
Description
60S ribosomal protein L35
Coordinates
chr2:+:79610945..79613138
Molecular Weight (calculated)
17863.5 Da
IEP (calculated)
11.495
GRAVY (calculated)
-0.497
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MARIKVHELR GKSKADLQAQ LKEFKSELSL LRVAKVTGGA PNKLSKIKVV RTSIARVLTV ISQKQKSALR EAYKKKKLLP LDLRPKKTRA IRRRLTKHQV
101: YAHVPCVYSN LSALTRRVYM LKLLSDCSTS ALSLKTEREK KREKYFPMRK YAIKA
101: YAHVPCVYSN LSALTRRVYM LKLLSDCSTS ALSLKTEREK KREKYFPMRK YAIKA
001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV
101: SLKTEREKKK EMYFPVRKYA IKV
Arabidopsis Description
Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.