Factsheet for Bra000131.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G39390.1	Thale cress	cytosol	57.35	95.12
Bra009577.1-P	Field mustard	cytosol	55.88	92.68
AT3G55170.1	Thale cress	cytosol	55.39	91.87
PGSC0003DMT400078146	Potato	cytosol	54.9	91.06
PGSC0003DMT400060449	Potato	cytosol	54.9	91.06
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	54.9	91.06
Solyc05g054810.2.1	Tomato	cytosol	54.9	91.06
Solyc06g075620.2.1	Tomato	unclear	54.9	91.06
Bra001306.1-P	Field mustard	cytosol	54.9	91.06
Bra028867.1-P	Field mustard	cytosol	54.9	91.06
Bra029771.1-P	Field mustard	cytosol	54.9	91.06
Bra034070.1-P	Field mustard	cytosol	54.9	91.06
PGSC0003DMT400077604	Potato	cytosol	54.41	90.24
VIT_00s0317g00130.t01	Wine grape	cytosol	52.94	87.8
KRH36218	Soybean	mitochondrion, nucleus	52.94	87.8
KRG92967	Soybean	cytosol	52.94	87.8
TraesCS2D01G277700.1	Wheat	cytosol	51.96	86.89
TraesCS2A01G278600.1	Wheat	cytosol, unclear	51.47	86.07
EES05110	Sorghum	cytosol	51.47	85.37
EES05112	Sorghum	cytosol	51.47	85.37
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	50.98	85.25
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	50.98	84.55
Zm00001d025160_P001	Maize	cytosol	50.49	83.74
CDY24964	Canola	cytosol	59.31	83.45
Os04t0376000-01	Rice	cytosol	50.0	82.93
Os02t0503400-01	Rice	nucleus	49.51	82.11
Zm00001d004349_P001	Maize	cytosol, plastid	38.24	75.73
Zm00001d053550_P001	Maize	cytosol	38.24	75.73
CDY07652	Canola	cytosol	58.82	75.0
HORVU2Hr1G068120.2	Barley	cytosol	51.96	74.13
VIT_06s0004g04020.t01	Wine grape	cytosol	52.94	72.97
PGSC0003DMT400048945	Potato	cytosol	35.29	72.0
GSMUA_Achr4P30580_001	Banana	cytosol	51.96	68.83
Zm00001d004052_P001	Maize	cytosol	51.47	67.74
GSMUA_Achr10P...	Banana	cytosol, plastid	50.49	66.45
GSMUA_Achr10P...	Banana	cytosol	49.51	61.96
Solyc01g010960.1.1	Tomato	cytosol	27.45	54.9
GSMUA_Achr2P16120_001	Banana	cytosol	49.51	51.27
GSMUA_Achr8P02690_001	Banana	cytosol	38.24	50.98
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.49	49.52

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	EnsemblPlantsGene:Bra000131	EnsemblPlants:Bra000131.1	EnsemblPlants:Bra000131.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M4C7F3	HAMAP:MF_00374	PFAM:PF00831
ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L29_CS
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI00025401E3	:	:	:

Description

AT2G39390 (E=1e-058) | 60S ribosomal protein L35 (RPL35B)

Coordinates

chrA03:-:9462423..9466967

Molecular Weight (calculated)

23915.6 Da

IEP (calculated)

10.874

GRAVY (calculated)

-0.734

Length

204 amino acids

Sequence
(BLAST)

001: MARIKVHELR EKSKTDLSTQ LKDFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKLALR EAYKNKKFLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKDEMDKKII ELRNELELAN RRCEAYRTNL LSVLKEMEDQ KLQAIDRDKR DVCQQEVHEV YVHLPIKQNC RSTRSSLIPN
201: ALNA

Best Arabidopsis Sequence Match ( AT2G39390.1 )
(BLAST)

001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.