Factsheet for PGSC0003DMT400060449

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054810.2.1	Tomato	cytosol	100.0	100.0
PGSC0003DMT400078146	Potato	cytosol	95.12	95.12
PGSC0003DMT400077604	Potato	cytosol	95.12	95.12
VIT_00s0317g00130.t01	Wine grape	cytosol	92.68	92.68
KRH36218	Soybean	mitochondrion, nucleus	91.87	91.87
KRG92967	Soybean	cytosol	91.87	91.87
AT2G39390.1	Thale cress	cytosol	90.24	90.24
AT3G55170.1	Thale cress	cytosol	89.43	89.43
TraesCS2A01G278600.1	Wheat	cytosol, unclear	85.37	86.07
TraesCS2D01G277700.1	Wheat	cytosol	84.55	85.25
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	83.74	84.43
EES05110	Sorghum	cytosol	83.74	83.74
EES05112	Sorghum	cytosol	83.74	83.74
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	82.93	82.93
Os04t0376000-01	Rice	cytosol	82.93	82.93
Zm00001d025160_P001	Maize	cytosol	82.11	82.11
Os02t0503400-01	Rice	nucleus	82.11	82.11
CDY24964	Canola	cytosol	91.06	77.24
PGSC0003DMT400048945	Potato	cytosol	61.79	76.0
VIT_06s0004g04020.t01	Wine grape	cytosol	91.06	75.68
Zm00001d053550_P001	Maize	cytosol	61.79	73.79
Zm00001d004349_P001	Maize	cytosol, plastid	61.79	73.79
HORVU2Hr1G068120.2	Barley	cytosol	85.37	73.43
CDY07652	Canola	cytosol	90.24	69.38
GSMUA_Achr10P...	Banana	cytosol, plastid	86.18	68.39
GSMUA_Achr4P30580_001	Banana	cytosol	85.37	68.18
Zm00001d004052_P001	Maize	cytosol	82.93	65.81
GSMUA_Achr10P...	Banana	cytosol	82.93	62.58
CDY07005	Canola	cytosol	68.29	54.9
Bra000131.1-P	Field mustard	cytosol	91.06	54.9
GSMUA_Achr2P16120_001	Banana	cytosol	84.55	52.79
GSMUA_Achr8P02690_001	Banana	cytosol	65.04	52.29
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.37	50.48
CDX93266	Canola	mitochondrion	39.02	48.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	EntrezGene:102598040	MapMan:17.1.2.1.35	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:M1C5W2	HAMAP:MF_00374	PFAM:PF00831	EnsemblPlantsGene:PGSC0003DMG400023512	PGSC:PGSC0003DMG400023512	EnsemblPlants:PGSC0003DMT400060449
PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012
UniParc:UPI0002766CC1	RefSeq:XP_006345921.1	:	:	:	:

Description

60S ribosomal protein L35 [Source:PGSC_GENE;Acc:PGSC0003DMG400023512]

Coordinates

chr5:+:50537129..50539408

Molecular Weight (calculated)

14284.2 Da

IEP (calculated)

11.515

GRAVY (calculated)

-0.582

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR NKSKPDLLTQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV ISQKQKAALR EVYKNKKYLP LDLRPKKTRA IRKRLTKHQA
101: SLKTEREKKK EMYFPLRKYA IKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.