Factsheet for Zm00001d016549_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05112	Sorghum	cytosol	98.37	98.37
EES05110	Sorghum	cytosol	98.37	98.37
Zm00001d025160_P001	Maize	cytosol	96.75	96.75
Os02t0503400-01	Rice	nucleus	91.87	91.87
Zm00001d053550_P001	Maize	cytosol	74.8	89.32
Zm00001d004349_P001	Maize	cytosol, plastid	74.8	89.32
AT3G09500.1	Thale cress	cytosol	86.99	86.99
AT2G39390.1	Thale cress	cytosol	86.18	86.18
VIT_00s0317g00130.t01	Wine grape	cytosol	86.18	86.18
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	85.37	85.37
PGSC0003DMT400078146	Potato	cytosol	85.37	85.37
Bra028867.1-P	Field mustard	cytosol	84.55	84.55
AT3G55170.1	Thale cress	cytosol	84.55	84.55
Solyc06g075620.2.1	Tomato	unclear	84.55	84.55
PGSC0003DMT400077604	Potato	cytosol	84.55	84.55
Bra009577.1-P	Field mustard	cytosol	84.55	84.55
Bra029771.1-P	Field mustard	cytosol	83.74	83.74
KRH10326	Soybean	endoplasmic reticulum	83.74	83.74
Bra001306.1-P	Field mustard	cytosol	83.74	83.74
Bra034070.1-P	Field mustard	cytosol	83.74	83.74
KRH32348	Soybean	mitochondrion, nucleus	82.93	82.93
Solyc05g054810.2.1	Tomato	cytosol	82.93	82.93
PGSC0003DMT400060449	Potato	cytosol	82.93	82.93
KRH22989	Soybean	cytosol	82.93	82.93
KRH19753	Soybean	cytosol	82.93	82.93
KRH36218	Soybean	mitochondrion, nucleus	81.3	81.3
KRG92967	Soybean	cytosol	81.3	81.3
Zm00001d004052_P001	Maize	cytosol	96.75	76.77
CDY54380	Canola	cytosol	83.74	76.3
CDY41605	Canola	cytosol	84.55	75.91
CDY67681	Canola	cytosol	83.74	74.1
CDY44711	Canola	cytosol	83.74	74.1
AT5G02610.2	Thale cress	cytosol	87.8	73.97
CDY24964	Canola	cytosol	84.55	71.72
PGSC0003DMT400048945	Potato	cytosol	57.72	71.0
VIT_06s0004g04020.t01	Wine grape	cytosol	85.37	70.95
GSMUA_Achr4P30580_001	Banana	cytosol	88.62	70.78
GSMUA_Achr10P...	Banana	cytosol, plastid	88.62	70.32
CDY55408	Canola	cytosol	82.93	67.55
CDY10436	Canola	cytosol	84.55	66.67
CDX73982	Canola	mitochondrion	83.74	66.03
CDY07930	Canola	extracellular	83.74	65.61
GSMUA_Achr10P...	Banana	cytosol	84.55	63.8
CDY07652	Canola	cytosol	82.93	63.75
CDY04860	Canola	extracellular	84.55	61.54
CDY68399	Canola	cytosol	83.74	60.23
Solyc01g010960.1.1	Tomato	cytosol	45.53	54.9
GSMUA_Achr2P16120_001	Banana	cytosol	86.18	53.81
CDY07005	Canola	cytosol	66.67	53.59
GSMUA_Achr8P02690_001	Banana	cytosol	64.23	51.63
Bra000131.1-P	Field mustard	cytosol	84.55	50.98
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.55	50.0
CDX93266	Canola	mitochondrion	39.02	48.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	EntrezGene:100282133	MapMan:17.1.2.1.35	ProteinID:AQK71139.1	UniProt:B6SX73
EMBL:BT062656	ncoils:Coil	EMBL:EU957338	EMBL:EU958536	EMBL:EU959692	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35
InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI000182C2CA	EnsemblPlantsGene:Zm00001d016549	EnsemblPlants:Zm00001d016549_P001
EnsemblPlants:Zm00001d016549_T001	SEG:seg	:	:	:	:

Description

60S ribosomal protein L3560S ribosomal protein L35-1

Coordinates

chr5:+:167009621..167011782

Molecular Weight (calculated)

14301.1 Da

IEP (calculated)

11.892

GRAVY (calculated)

-0.750

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR GKSKTDLQAQ LKELKSELSL LRVAKVTGGA PNKLSKIKVV RTSIARVLTV ISQKQKSALR EAYKKKNLLP LDLRPKKTRA IRRRLTKHQL
101: SLKTEREKKR EKYFPMRKYA IKA

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.