Factsheet for Solyc04g010240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077604	Potato	cytosol	99.19	99.19
Solyc05g054810.2.1	Tomato	cytosol	95.94	95.94
Solyc06g075620.2.1	Tomato	unclear	95.12	95.12
VIT_00s0317g00130.t01	Wine grape	cytosol	91.87	91.87
AT2G39390.1	Thale cress	cytosol	91.06	91.06
AT3G55170.1	Thale cress	cytosol	89.43	89.43
KRH36218	Soybean	mitochondrion, nucleus	89.43	89.43
KRG92967	Soybean	cytosol	89.43	89.43
TraesCS2D01G277700.1	Wheat	cytosol	86.18	86.89
EES05112	Sorghum	cytosol	86.18	86.18
EES05110	Sorghum	cytosol	86.18	86.18
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	85.37	85.37
TraesCS2A01G278600.1	Wheat	cytosol, unclear	84.55	85.25
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	84.55	85.25
Zm00001d025160_P001	Maize	cytosol	84.55	84.55
Os04t0376000-01	Rice	cytosol	82.93	82.93
Os02t0503400-01	Rice	nucleus	82.11	82.11
CDY24964	Canola	cytosol	91.06	77.24
Zm00001d053550_P001	Maize	cytosol	64.23	76.7
Zm00001d004349_P001	Maize	cytosol, plastid	64.23	76.7
VIT_06s0004g04020.t01	Wine grape	cytosol	90.24	75.0
HORVU2Hr1G068120.2	Barley	cytosol	85.37	73.43
CDY07652	Canola	cytosol	90.24	69.38
GSMUA_Achr4P30580_001	Banana	cytosol	86.18	68.83
GSMUA_Achr10P...	Banana	cytosol, plastid	85.37	67.74
Zm00001d004052_P001	Maize	cytosol	84.55	67.1
GSMUA_Achr10P...	Banana	cytosol	82.11	61.96
Solyc01g010960.1.1	Tomato	cytosol	50.41	60.78
CDY07005	Canola	cytosol	69.92	56.21
Bra000131.1-P	Field mustard	cytosol	91.06	54.9
GSMUA_Achr2P16120_001	Banana	cytosol	83.74	52.28
GSMUA_Achr8P02690_001	Banana	cytosol	63.41	50.98
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.37	50.48
CDX93266	Canola	mitochondrion	40.65	50.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	ncoils:Coil	GO:GO:0000463	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	UniProt:K4BPH8	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872
PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	EnsemblPlantsGene:Solyc04g010240.2	EnsemblPlants:Solyc04g010240.2.1
TIGRFAMs:TIGR00012	UniParc:UPI0002765E15	:	:	:	:

Description

No Description!

Coordinates

chr4:-:3562006..3565042

Molecular Weight (calculated)

14290.1 Da

IEP (calculated)

11.515

GRAVY (calculated)

-0.591

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR NKSKTDLLAQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV ISQKQKSALR EVYKNKKYLP LDLRPKKTRA IRKRLTKHQS
101: SLKTEREKKK EMYFPIRKYA IKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.