Factsheet for GSMUA_Achr10P26790_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0376000-01	Rice	cytosol	71.61	90.24
Os02t0503400-01	Rice	nucleus	70.97	89.43
EES05112	Sorghum	cytosol	70.97	89.43
EES05110	Sorghum	cytosol	70.97	89.43
TraesCS2A01G278600.1	Wheat	cytosol, unclear	70.32	89.34
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	70.32	89.34
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	70.32	88.62
KRH10326	Soybean	endoplasmic reticulum	69.68	87.8
Zm00001d025160_P001	Maize	cytosol	69.68	87.8
TraesCS2D01G277700.1	Wheat	cytosol	69.03	87.7
KRH32348	Soybean	mitochondrion, nucleus	69.03	86.99
KRH22989	Soybean	cytosol	69.03	86.99
KRH19753	Soybean	cytosol	69.03	86.99
PGSC0003DMT400060449	Potato	cytosol	68.39	86.18
VIT_00s0317g00130.t01	Wine grape	cytosol	68.39	86.18
PGSC0003DMT400077604	Potato	cytosol	68.39	86.18
Solyc05g054810.2.1	Tomato	cytosol	68.39	86.18
PGSC0003DMT400078146	Potato	cytosol	68.39	86.18
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	67.74	85.37
AT3G09500.1	Thale cress	cytosol	67.1	84.55
Solyc06g075620.2.1	Tomato	unclear	67.1	84.55
Bra034070.1-P	Field mustard	cytosol	66.45	83.74
Bra029771.1-P	Field mustard	cytosol	66.45	83.74
KRH36218	Soybean	mitochondrion, nucleus	66.45	83.74
Bra001306.1-P	Field mustard	cytosol	66.45	83.74
AT2G39390.1	Thale cress	cytosol	66.45	83.74
KRG92967	Soybean	cytosol	66.45	83.74
Bra009577.1-P	Field mustard	cytosol	65.81	82.93
Bra028867.1-P	Field mustard	cytosol	65.16	82.11
AT3G55170.1	Thale cress	cytosol	65.16	82.11
Zm00001d004349_P001	Maize	cytosol, plastid	52.26	78.64
Zm00001d053550_P001	Maize	cytosol	52.26	78.64
HORVU2Hr1G068120.2	Barley	cytosol	72.26	78.32
CDY54380	Canola	cytosol	67.74	77.78
GSMUA_Achr4P30580_001	Banana	cytosol	76.13	76.62
CDY44711	Canola	cytosol	68.39	76.26
CDY67681	Canola	cytosol	68.39	76.26
CDY41605	Canola	cytosol	67.1	75.91
VIT_06s0004g04020.t01	Wine grape	cytosol	69.03	72.3
CDY24964	Canola	cytosol	67.1	71.72
AT5G02610.2	Thale cress	cytosol	67.1	71.23
GSMUA_Achr10P...	Banana	cytosol	74.19	70.55
Zm00001d004052_P001	Maize	cytosol	70.32	70.32
CDX73982	Canola	mitochondrion	70.32	69.87
PGSC0003DMT400048945	Potato	cytosol	44.52	69.0
CDY07930	Canola	extracellular	69.68	68.79
CDY55408	Canola	cytosol	65.81	67.55
CDY10436	Canola	cytosol	67.74	67.31
CDY07652	Canola	cytosol	66.45	64.38
CDY04860	Canola	extracellular	67.1	61.54
GSMUA_Achr2P16120_001	Banana	cytosol	78.06	61.42
CDY68399	Canola	cytosol	66.45	60.23
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.77	57.21
GSMUA_Achr8P02690_001	Banana	cytosol	55.48	56.21
Solyc01g010960.1.1	Tomato	cytosol	35.48	53.92
CDY07005	Canola	cytosol	52.26	52.94
Bra000131.1-P	Field mustard	cytosol	66.45	50.49
CDX93266	Canola	mitochondrion	29.03	45.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr10G26790_001	EnsemblPlants:GSMUA_Achr10P26790_001	EnsemblPlants:GSMUA_Achr10T26790_001	UniProt:M0RLQ3	HAMAP:MF_00374	PFAM:PF00831
PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012
UniParc:UPI000295D61B	SEG:seg	:	:	:	:

Description

60S ribosomal protein L35 [Source:GMGC_GENE;Acc:GSMUA_Achr10G26790_001]

Coordinates

chr10:-:30175911..30178728

Molecular Weight (calculated)

18038.8 Da

IEP (calculated)

11.824

GRAVY (calculated)

-0.588

Length

155 amino acids

Sequence
(BLAST)

001: MNHWTESVVV PTPLCSIRIS VRRRSGRVDS LTMARIKVHE LRGKTKVELQ SQLKDLKNEL SLLRVAKVTG GAPNKLSKIK VVRLSIARVL TVISQKQKAA
101: LREVYKKKKL MPLDLRPKKT RAIRRRLTKH QESLKTEREK KKEMYFPMRK YAIKA

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.