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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G09500.1 Thale cress cytosol 80.82 95.94
AT2G39390.1 Thale cress cytosol 80.82 95.94
AT3G55170.1 Thale cress cytosol 78.77 93.5
Bra028867.1-P Field mustard cytosol 78.77 93.5
Bra009577.1-P Field mustard cytosol 78.08 92.68
EES05110 Sorghum cytosol 74.66 88.62
KRH32348 Soybean mitochondrion, nucleus 74.66 88.62
EES05112 Sorghum cytosol 74.66 88.62
Zm00001d016549_P001 Maize cytosol, mitochondrion, plasma membrane, plastid 73.97 87.8
KRH19753 Soybean cytosol 73.97 87.8
Zm00001d025160_P001 Maize cytosol 73.29 86.99
TraesCS2D01G277700.1 Wheat cytosol 72.6 86.89
TraesCS2B01G296200.1 Wheat cytosol, golgi, unclear 71.92 86.07
TraesCS2A01G278600.1 Wheat cytosol, unclear 71.92 86.07
Os04t0376000-01 Rice cytosol 70.55 83.74
Os02t0503400-01 Rice nucleus 69.86 82.93
Zm00001d004349_P001 Maize cytosol, plastid 56.16 79.61
Zm00001d053550_P001 Maize cytosol 56.16 79.61
CDY55408 Canola cytosol 78.08 75.5
HORVU2Hr1G068120.2 Barley cytosol 73.29 74.83
CDY10436 Canola cytosol 78.08 73.08
Zm00001d004052_P001 Maize cytosol 74.66 70.32
CDY04860 Canola extracellular 79.45 68.64
GSMUA_Achr4P30580_001 Banana cytosol 71.92 68.18
GSMUA_Achr10P... Banana cytosol, plastid 71.23 67.1
CDY68399 Canola cytosol 77.4 66.08
GSMUA_Achr10P... Banana cytosol 70.55 63.19
GSMUA_Achr2P16120_001 Banana cytosol 69.86 51.78
GSMUA_Achr8P02690_001 Banana cytosol 53.42 50.98
GSMUA_Achr9P03110_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 70.55 49.52
Protein Annotations
Gene3D:1.10.20.90Gene3D:1.10.287.310MapMan:17.1.2.1.35EntrezGene:820107EntrezGene:831853ProteinID:AED90498.1
ArrayExpress:AT5G02610EnsemblPlantsGene:AT5G02610RefSeq:AT5G02610TAIR:AT5G02610RefSeq:AT5G02610-TAIR-GEnsemblPlants:AT5G02610.2
TAIR:AT5G02610.2Unigene:At.43044ncoils:CoilUniProt:F4KDR2GO:GO:0003674GO:GO:0003735
GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773
GO:GO:0005774GO:GO:0005829GO:GO:0005840GO:GO:0005886GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009506GO:GO:0009987GO:GO:0016020GO:GO:0019538
GO:GO:0022625GO:GO:0022626HAMAP:MF_00374RefSeq:NP_001190209.1PFAM:PF00831PO:PO:0000005
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016
PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PANTHER:PTHR13872PANTHER:PTHR13872:SF36
InterPro:Ribosomal_L29/L35InterPro:Ribosomal_L29/L35_sfSUPFAM:SSF46561TIGRFAMs:TIGR00012UniParc:UPI0001E93136SEG:seg
Description
Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
Coordinates
chr5:+:587478..588800
Molecular Weight (calculated)
17022.4 Da
IEP (calculated)
11.260
GRAVY (calculated)
-0.623
Length
146 amino acids
Sequence
(BLAST)
001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIRMD VDLAYDSNMY LRSIKFGPCI KVVRKSIAQV LTVISQKQKS ALREAYKNKK
101: LLPLDLRPKK TRAIRRRLTK HQASLKTERE KKKEMYFPVR KYAIKV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.