Factsheet for Os04t0376000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0503400-01	Rice	nucleus	97.56	97.56
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	95.12	95.9
TraesCS2A01G278600.1	Wheat	cytosol, unclear	95.12	95.9
TraesCS2D01G277700.1	Wheat	cytosol	93.5	94.26
KRH10326	Soybean	endoplasmic reticulum	86.99	86.99
VIT_00s0317g00130.t01	Wine grape	cytosol	86.18	86.18
KRH19753	Soybean	cytosol	86.18	86.18
KRH22989	Soybean	cytosol	86.18	86.18
KRH32348	Soybean	mitochondrion, nucleus	86.18	86.18
PGSC0003DMT400078146	Potato	cytosol	85.37	85.37
Solyc06g075620.2.1	Tomato	unclear	84.55	84.55
AT3G09500.1	Thale cress	cytosol	83.74	83.74
AT2G39390.1	Thale cress	cytosol	83.74	83.74
PGSC0003DMT400077604	Potato	cytosol	83.74	83.74
KRG92967	Soybean	cytosol	82.93	82.93
KRH36218	Soybean	mitochondrion, nucleus	82.93	82.93
PGSC0003DMT400060449	Potato	cytosol	82.93	82.93
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	82.93	82.93
Solyc05g054810.2.1	Tomato	cytosol	82.93	82.93
Bra034070.1-P	Field mustard	cytosol	82.93	82.93
Bra029771.1-P	Field mustard	cytosol	82.93	82.93
Bra001306.1-P	Field mustard	cytosol	82.93	82.93
Zm00001d004349_P001	Maize	cytosol, plastid	69.11	82.52
Zm00001d053550_P001	Maize	cytosol	69.11	82.52
HORVU2Hr1G068120.2	Barley	cytosol	95.94	82.52
AT3G55170.1	Thale cress	cytosol	81.3	81.3
Bra009577.1-P	Field mustard	cytosol	81.3	81.3
Bra028867.1-P	Field mustard	cytosol	81.3	81.3
CDY54380	Canola	cytosol	82.93	75.56
CDY41605	Canola	cytosol	82.11	73.72
CDY44711	Canola	cytosol	82.93	73.38
CDY67681	Canola	cytosol	82.93	73.38
GSMUA_Achr10P...	Banana	cytosol, plastid	90.24	71.61
GSMUA_Achr4P30580_001	Banana	cytosol	89.43	71.43
VIT_06s0004g04020.t01	Wine grape	cytosol	85.37	70.95
AT5G02610.2	Thale cress	cytosol	83.74	70.55
CDY24964	Canola	cytosol	82.93	70.34
PGSC0003DMT400048945	Potato	cytosol	56.91	70.0
GSMUA_Achr10P...	Banana	cytosol	86.99	65.64
CDX73982	Canola	mitochondrion	82.93	65.38
CDY07930	Canola	extracellular	82.93	64.97
CDY55408	Canola	cytosol	79.67	64.9
CDY10436	Canola	cytosol	81.3	64.1
CDY07652	Canola	cytosol	81.3	62.5
CDY04860	Canola	extracellular	81.3	59.17
CDY68399	Canola	cytosol	80.49	57.89
GSMUA_Achr2P16120_001	Banana	cytosol	87.8	54.82
GSMUA_Achr8P02690_001	Banana	cytosol	67.48	54.25
CDY07005	Canola	cytosol	65.04	52.29
Solyc01g010960.1.1	Tomato	cytosol	43.09	51.96
Bra000131.1-P	Field mustard	cytosol	82.93	50.0
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.55	50.0
CDX93266	Canola	mitochondrion	37.4	46.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	EntrezGene:4335607	EMBL:AK064842	ProteinID:BAF14492.1
ProteinID:BAS88850.1	ProteinID:CAE04591.2	ncoils:Coil	GO:GO:0000463	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	HAMAP:MF_00374	EnsemblPlantsGene:Os04g0376000	EnsemblPlants:Os04t0376000-01	PFAM:PF00831	PANTHER:PTHR13872
PANTHER:PTHR13872:SF36	UniProt:Q7XMJ1	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012
UniParc:UPI000021C7F6	RefSeq:XP_015635923.1	:	:	:	:

Description

Similar to 60S ribosomal protein L35-1. (Os04t0376000-01)

Coordinates

chr4:-:18369364..18371131

Molecular Weight (calculated)

14225.0 Da

IEP (calculated)

11.892

GRAVY (calculated)

-0.690

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR GKNKAELQAQ LKDLKAELSL LRVAKVTGGA PNKLSKIKVV RTSIARVLTV ISQKQKAALR EAYKKKSLLP LDLRPKKTRA IRRRLTKHQL
101: SLKTEREKKR EKYFPMRKYA VKA

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.