Factsheet for Solyc06g075620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078146	Potato	cytosol	98.37	98.37
Solyc05g054810.2.1	Tomato	cytosol	95.12	95.12
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	95.12	95.12
KRH36218	Soybean	mitochondrion, nucleus	91.87	91.87
KRG92967	Soybean	cytosol	91.87	91.87
VIT_00s0317g00130.t01	Wine grape	cytosol	91.06	91.06
AT2G39390.1	Thale cress	cytosol	89.43	89.43
AT3G55170.1	Thale cress	cytosol	87.8	87.8
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	85.37	86.07
EES05112	Sorghum	cytosol	85.37	85.37
EES05110	Sorghum	cytosol	85.37	85.37
TraesCS2D01G277700.1	Wheat	cytosol	84.55	85.25
TraesCS2A01G278600.1	Wheat	cytosol, unclear	84.55	85.25
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	84.55	84.55
Os04t0376000-01	Rice	cytosol	84.55	84.55
Zm00001d025160_P001	Maize	cytosol	83.74	83.74
Os02t0503400-01	Rice	nucleus	83.74	83.74
CDY24964	Canola	cytosol	91.06	77.24
Zm00001d004349_P001	Maize	cytosol, plastid	63.41	75.73
Zm00001d053550_P001	Maize	cytosol	63.41	75.73
VIT_06s0004g04020.t01	Wine grape	cytosol	90.24	75.0
HORVU2Hr1G068120.2	Barley	cytosol	86.99	74.83
GSMUA_Achr4P30580_001	Banana	cytosol	86.99	69.48
CDY07652	Canola	cytosol	90.24	69.38
GSMUA_Achr10P...	Banana	cytosol, plastid	84.55	67.1
Zm00001d004052_P001	Maize	cytosol	83.74	66.45
GSMUA_Achr10P...	Banana	cytosol	82.93	62.58
Solyc01g010960.1.1	Tomato	cytosol	47.97	57.84
CDY07005	Canola	cytosol	69.11	55.56
Bra000131.1-P	Field mustard	cytosol	91.06	54.9
GSMUA_Achr8P02690_001	Banana	cytosol	66.67	53.59
GSMUA_Achr2P16120_001	Banana	cytosol	82.93	51.78
CDX93266	Canola	mitochondrion	41.46	51.0
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.55	50.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	EMBL:AB211522	ncoils:Coil	GO:GO:0000463
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872
PANTHER:PTHR13872:SF36	UniProt:Q53U38	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	EnsemblPlantsGene:Solyc06g075620.2
EnsemblPlants:Solyc06g075620.2.1	TIGRFAMs:TIGR00012	UniParc:UPI0000509113	:	:	:

Description

Similar to 60S ribosomal protein L35 [Source:UniProtKB/TrEMBL;Acc:Q53U38]

Coordinates

chr6:-:47004630..47007100

Molecular Weight (calculated)

14268.2 Da

IEP (calculated)

11.515

GRAVY (calculated)

-0.542

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR NKSKTELLAQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV ISQKQKLALR EAYKNKKYLP LDLRPKKTRA IRKRLTKHQA
101: SLKTEREKKK ELYFPLRKYA IKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.