CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G39390.1	Thale cress	cytosol	58.17	72.36
PGSC0003DMT400078146	Potato	cytosol	56.21	69.92
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	56.21	69.92
AT3G55170.1	Thale cress	cytosol	55.56	69.11
PGSC0003DMT400077604	Potato	cytosol	55.56	69.11
Solyc06g075620.2.1	Tomato	unclear	55.56	69.11
PGSC0003DMT400060449	Potato	cytosol	54.9	68.29
Solyc05g054810.2.1	Tomato	cytosol	54.9	68.29
KRH36218	Soybean	mitochondrion, nucleus	54.25	67.48
KRG92967	Soybean	cytosol	54.25	67.48
EES05110	Sorghum	cytosol	54.25	67.48
EES05112	Sorghum	cytosol	54.25	67.48
TraesCS2D01G277700.1	Wheat	cytosol	53.59	67.21
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	53.59	66.67
TraesCS2A01G278600.1	Wheat	cytosol, unclear	52.94	66.39
CDY54380	Canola	cytosol	58.17	65.93
Zm00001d025160_P001	Maize	cytosol	52.94	65.85
VIT_00s0317g00130.t01	Wine grape	cytosol	52.94	65.85
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	52.29	65.57
Os04t0376000-01	Rice	cytosol	52.29	65.04
Os02t0503400-01	Rice	nucleus	52.29	65.04
CDY41605	Canola	cytosol	57.52	64.23
CDY24964	Canola	cytosol	60.78	64.14
CDY67681	Canola	cytosol	58.17	64.03
CDY44711	Canola	cytosol	58.17	64.03
CDY55408	Canola	cytosol	58.82	59.6
CDY10436	Canola	cytosol	59.48	58.33
Zm00001d004349_P001	Maize	cytosol, plastid	39.22	58.25
Zm00001d053550_P001	Maize	cytosol	39.22	58.25
CDY07652	Canola	cytosol	60.78	58.12
HORVU2Hr1G068120.2	Barley	cytosol	54.25	58.04
VIT_06s0004g04020.t01	Wine grape	cytosol	55.56	57.43
CDY07930	Canola	extracellular	58.82	57.32
CDX73982	Canola	mitochondrion	57.52	56.41
CDY04860	Canola	extracellular	61.44	55.62
GSMUA_Achr4P30580_001	Banana	cytosol	54.9	54.55
Zm00001d004052_P001	Maize	cytosol	54.25	53.55
CDY68399	Canola	cytosol	59.48	53.22
GSMUA_Achr10P...	Banana	cytosol, plastid	52.94	52.26
GSMUA_Achr10P...	Banana	cytosol	52.29	49.08
PGSC0003DMT400048945	Potato	cytosol	32.03	49.0
GSMUA_Achr2P16120_001	Banana	cytosol	54.25	42.13
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.59	39.42
GSMUA_Achr8P02690_001	Banana	cytosol	37.25	37.25
CDX93266	Canola	mitochondrion	24.18	37.0
Solyc01g010960.1.1	Tomato	cytosol	23.53	35.29

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:A0A078EY34	EnsemblPlants:CDY07005	ProteinID:CDY07005
ProteinID:CDY07005.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00123318001	PFAM:PF00831	PANTHER:PTHR13872
PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EE72B7

Description

BnaA04g23100D

Coordinates

chrLK031974:-:645793..646466

Molecular Weight (calculated)

17928.2 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.795

Length

153 amino acids

Sequence
(BLAST)

001: MPILKAQLNI NPKIRYKSQA IIVFISDNTM HTKEETQWVR EPTSNSETFQ PQQPRLKVHE LREKSKTDLS AQLQDFKAEL TLLRVAKVTG GAPNKLSKIK
101: VAYKTKKFLP LDLRPKKTRA IRRRLTKHQA SLKTEKEKKK EMYFPIRKYA IKV

Best Arabidopsis Sequence Match ( AT2G39390.1 )
(BLAST)

001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.