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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • cytosol 3
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 19621931
extracellular: 24083427
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os04t0376000-01 Rice cytosol 97.56 97.56
EES05112 Sorghum cytosol 92.68 92.68
EES05110 Sorghum cytosol 92.68 92.68
Zm00001d016549_P001 Maize cytosol, mitochondrion, plasma membrane, plastid 91.87 91.87
Zm00001d025160_P001 Maize cytosol 91.06 91.06
KRH10326 Soybean endoplasmic reticulum 86.99 86.99
KRH32348 Soybean mitochondrion, nucleus 86.18 86.18
KRH22989 Soybean cytosol 86.18 86.18
KRH19753 Soybean cytosol 86.18 86.18
VIT_00s0317g00130.t01 Wine grape cytosol 85.37 85.37
PGSC0003DMT400078146 Potato cytosol 84.55 84.55
Solyc06g075620.2.1 Tomato unclear 83.74 83.74
AT3G09500.1 Thale cress cytosol 82.93 82.93
PGSC0003DMT400077604 Potato cytosol 82.93 82.93
KRH36218 Soybean mitochondrion, nucleus 82.93 82.93
KRG92967 Soybean cytosol 82.93 82.93
AT2G39390.1 Thale cress cytosol 82.93 82.93
Bra034070.1-P Field mustard cytosol 82.11 82.11
Bra029771.1-P Field mustard cytosol 82.11 82.11
PGSC0003DMT400060449 Potato cytosol 82.11 82.11
Bra001306.1-P Field mustard cytosol 82.11 82.11
Solyc04g010240.2.1 Tomato nucleus, plastid, unclear 82.11 82.11
Solyc05g054810.2.1 Tomato cytosol 82.11 82.11
AT3G55170.1 Thale cress cytosol 80.49 80.49
Bra009577.1-P Field mustard cytosol 80.49 80.49
Bra028867.1-P Field mustard cytosol 80.49 80.49
CDY54380 Canola cytosol 82.11 74.81
Zm00001d004052_P001 Maize cytosol 92.68 73.55
CDY41605 Canola cytosol 81.3 72.99
CDY67681 Canola cytosol 82.11 72.66
CDY44711 Canola cytosol 82.11 72.66
GSMUA_Achr10P... Banana cytosol, plastid 89.43 70.97
GSMUA_Achr4P30580_001 Banana cytosol 88.62 70.78
VIT_06s0004g04020.t01 Wine grape cytosol 84.55 70.27
AT5G02610.2 Thale cress cytosol 82.93 69.86
CDY24964 Canola cytosol 82.11 69.66
PGSC0003DMT400048945 Potato cytosol 54.47 67.0
GSMUA_Achr10P... Banana cytosol 86.18 65.03
CDX73982 Canola mitochondrion 82.11 64.74
CDY07930 Canola extracellular 82.11 64.33
CDY55408 Canola cytosol 78.86 64.24
CDY10436 Canola cytosol 80.49 63.46
CDY07652 Canola cytosol 80.49 61.88
CDY04860 Canola extracellular 80.49 58.58
CDY68399 Canola cytosol 79.67 57.31
GSMUA_Achr2P16120_001 Banana cytosol 86.99 54.31
GSMUA_Achr8P02690_001 Banana cytosol 65.85 52.94
CDY07005 Canola cytosol 65.04 52.29
Solyc01g010960.1.1 Tomato cytosol 42.28 50.98
GSMUA_Achr9P03110_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 83.74 49.52
Bra000131.1-P Field mustard cytosol 82.11 49.51
CDX93266 Canola mitochondrion 35.77 44.0
Protein Annotations
Gene3D:1.10.20.90Gene3D:1.10.287.310MapMan:17.1.2.1.35EntrezGene:4329423EMBL:AK059262EMBL:AK119701
ProteinID:BAD22912.1ProteinID:BAD23213.1ProteinID:BAF08818.1ProteinID:BAS78806.1ncoils:CoilProteinID:EEE57045.1
GO:GO:0000463GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022625HAMAP:MF_00374EnsemblPlantsGene:Os02g0503400
EnsemblPlants:Os02t0503400-01PFAM:PF00831PANTHER:PTHR13872PANTHER:PTHR13872:SF36UniProt:Q6K667InterPro:Ribosomal_L29/L35
InterPro:Ribosomal_L29/L35_sfSUPFAM:SSF46561TIGRFAMs:TIGR00012UniParc:UPI00003B04A6RefSeq:XP_015627286.1:
Description
RIBOSOMAL PROTEIN L35Similar to 60S ribosomal protein L35. (Os02t0503400-01)
Coordinates
chr2:+:17846294..17847820
Molecular Weight (calculated)
14245.0 Da
IEP (calculated)
11.862
GRAVY (calculated)
-0.695
Length
123 amino acids
Sequence
(BLAST)
001: MARIKVDELR GKNKAELQAQ LKDLKAELSL LRVAKVTGGA PNKLSKIKVV RTSIARVLTV ISQKQRAALR EAYKKKSLLP LDLRPKKTRA IRRRLTKHQL
101: SLKTEREKKR EKYFPMRKYA IKA
Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)
001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV
Arabidopsis Description
Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.