Factsheet for GSMUA_Achr9P03110_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, golgi, plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078146	Potato	cytosol	50.96	86.18
PGSC0003DMT400077604	Potato	cytosol	50.96	86.18
KRH22989	Soybean	cytosol	50.48	85.37
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	50.48	85.37
Solyc05g054810.2.1	Tomato	cytosol	50.48	85.37
EES05110	Sorghum	cytosol	50.48	85.37
EES05112	Sorghum	cytosol	50.48	85.37
PGSC0003DMT400060449	Potato	cytosol	50.48	85.37
KRH32348	Soybean	mitochondrion, nucleus	50.48	85.37
KRH10326	Soybean	endoplasmic reticulum	50.48	85.37
KRH19753	Soybean	cytosol	50.48	85.37
Bra029771.1-P	Field mustard	cytosol	50.0	84.55
Bra034070.1-P	Field mustard	cytosol	50.0	84.55
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	50.0	84.55
Os04t0376000-01	Rice	cytosol	50.0	84.55
Bra001306.1-P	Field mustard	cytosol	50.0	84.55
Solyc06g075620.2.1	Tomato	unclear	50.0	84.55
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	49.52	84.43
TraesCS2A01G278600.1	Wheat	cytosol, unclear	49.52	84.43
Os02t0503400-01	Rice	nucleus	49.52	83.74
AT3G09500.1	Thale cress	cytosol	49.52	83.74
Zm00001d025160_P001	Maize	cytosol	49.52	83.74
TraesCS2D01G277700.1	Wheat	cytosol	49.04	83.61
VIT_00s0317g00130.t01	Wine grape	cytosol	49.04	82.93
KRH36218	Soybean	mitochondrion, nucleus	48.56	82.11
KRG92967	Soybean	cytosol	48.56	82.11
AT2G39390.1	Thale cress	cytosol	48.56	82.11
Bra028867.1-P	Field mustard	cytosol	48.08	81.3
Bra009577.1-P	Field mustard	cytosol	48.08	81.3
AT3G55170.1	Thale cress	cytosol	48.08	81.3
CDY54380	Canola	cytosol	50.0	77.04
GSMUA_Achr10P...	Banana	cytosol, plastid	57.21	76.77
CDY41605	Canola	cytosol	50.48	76.64
CDY44711	Canola	cytosol	50.96	76.26
Zm00001d004349_P001	Maize	cytosol, plastid	37.5	75.73
Zm00001d053550_P001	Maize	cytosol	37.5	75.73
CDY67681	Canola	cytosol	50.48	75.54
HORVU2Hr1G068120.2	Barley	cytosol	51.44	74.83
GSMUA_Achr10P...	Banana	cytosol	57.69	73.62
GSMUA_Achr4P30580_001	Banana	cytosol	54.33	73.38
CDY24964	Canola	cytosol	50.0	71.72
AT5G02610.2	Thale cress	cytosol	49.52	70.55
VIT_06s0004g04020.t01	Wine grape	cytosol	49.52	69.59
PGSC0003DMT400048945	Potato	cytosol	33.17	69.0
CDY07930	Canola	extracellular	50.96	67.52
CDX73982	Canola	mitochondrion	50.48	67.31
Zm00001d004052_P001	Maize	cytosol	49.52	66.45
CDY55408	Canola	cytosol	48.08	66.23
CDY10436	Canola	cytosol	49.52	66.03
CDY07652	Canola	cytosol	49.04	63.75
GSMUA_Achr8P02690_001	Banana	cytosol	46.63	63.4
GSMUA_Achr2P16120_001	Banana	cytosol	58.17	61.42
CDY04860	Canola	extracellular	49.52	60.95
CDY68399	Canola	cytosol	48.56	59.06
CDY07005	Canola	cytosol	39.42	53.59
Solyc01g010960.1.1	Tomato	cytosol	25.96	52.94
Bra000131.1-P	Field mustard	cytosol	49.52	50.49
CDX93266	Canola	mitochondrion	22.6	47.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr9G03110_001	EnsemblPlants:GSMUA_Achr9P03110_001	EnsemblPlants:GSMUA_Achr9T03110_001	UniProt:M0TX20	HAMAP:MF_00374	PFAM:PF00831
PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012
UniParc:UPI0002954CE4	SEG:seg	:	:	:	:

Description

60S ribosomal protein L35 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03110_001]

Coordinates

chr9:+:2205858..2209061

Molecular Weight (calculated)

24019.2 Da

IEP (calculated)

11.639

GRAVY (calculated)

-0.453

Length

208 amino acids

Sequence
(BLAST)

001: MRSCNKSLVG IFFCCFLEKG WRKKDVSAGI SLLSAASTPH VRIREISIII VEKYTKDIDM VIIFLPSAAT CIRGRRVPGR RHPFPMARIK VHELRGKSRT
101: ELHNQLKDLK NELSLLRVAK VTGGAPNKLS KIKVVRLSIA RVLTVNSQKQ KAALREVYKK KKHIPLDLRP KKTRAIRRRL TKHQESLKTE RQKKKEMYFP
201: TRKYAIKA

Best Arabidopsis Sequence Match ( AT3G09500.1 )
(BLAST)

001: MARIKVHELR EKSKSDLQNQ LKELKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV SSQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35A60S ribosomal protein L35-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.