CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32348	Soybean	mitochondrion, nucleus	96.75	96.75
KRH22989	Soybean	cytosol	96.75	96.75
KRH19753	Soybean	cytosol	95.94	95.94
KRH36218	Soybean	mitochondrion, nucleus	93.5	93.5
KRG92967	Soybean	cytosol	93.5	93.5
Os04t0376000-01	Rice	cytosol	86.99	86.99
Os02t0503400-01	Rice	nucleus	86.99	86.99
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	86.18	86.89
TraesCS2A01G278600.1	Wheat	cytosol, unclear	86.18	86.89
TraesCS2D01G277700.1	Wheat	cytosol	84.55	85.25
EES05112	Sorghum	cytosol	84.55	84.55
EES05110	Sorghum	cytosol	84.55	84.55
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	83.74	83.74
Zm00001d025160_P001	Maize	cytosol	82.93	82.93
HORVU2Hr1G068120.2	Barley	cytosol	86.99	74.83
Zm00001d004349_P001	Maize	cytosol, plastid	62.6	74.76
Zm00001d053550_P001	Maize	cytosol	62.6	74.76
GSMUA_Achr10P...	Banana	cytosol, plastid	87.8	69.68
GSMUA_Achr4P30580_001	Banana	cytosol	85.37	68.18
Zm00001d004052_P001	Maize	cytosol	84.55	67.1
GSMUA_Achr10P...	Banana	cytosol	86.99	65.64
GSMUA_Achr8P02690_001	Banana	cytosol	70.73	56.86
GSMUA_Achr2P16120_001	Banana	cytosol	86.99	54.31
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.37	50.48

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	EntrezGene:100798230	MapMan:17.1.2.1.35	EMBL:ACUP02009133	ncoils:Coil
EnsemblPlantsGene:GLYMA_15G042300	GO:GO:0000463	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:I1MDK2
EnsemblPlants:KRH10326	ProteinID:KRH10326	ProteinID:KRH10326.1	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872
PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI000233B614

Description

hypothetical protein

Coordinates

chr15:+:3307111..3308840

Molecular Weight (calculated)

14415.4 Da

IEP (calculated)

11.601

GRAVY (calculated)

-0.579

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVYELR YKTKAELLNQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLSIARVLTV ISQKQKAALR EAYKKKKYLP LDLRPKKTRA IRRRLTKHQA
101: SLKTQREKKK ELYFPMRKYA IKV

Best Arabidopsis Sequence Match ( AT2G39390.1 )
(BLAST)

001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.