Factsheet for TraesCS2B01G296200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G277700.1	Wheat	cytosol	98.36	98.36
TraesCS2A01G278600.1	Wheat	cytosol, unclear	98.36	98.36
Os04t0376000-01	Rice	cytosol	95.9	95.12
VIT_00s0317g00130.t01	Wine grape	cytosol	87.7	86.99
KRH10326	Soybean	endoplasmic reticulum	86.89	86.18
AT2G39390.1	Thale cress	cytosol	86.89	86.18
PGSC0003DMT400078146	Potato	cytosol	86.89	86.18
AT3G09500.1	Thale cress	cytosol	86.07	85.37
KRH19753	Soybean	cytosol	86.07	85.37
KRH22989	Soybean	cytosol	86.07	85.37
KRH32348	Soybean	mitochondrion, nucleus	86.07	85.37
PGSC0003DMT400077604	Potato	cytosol	86.07	85.37
Solyc06g075620.2.1	Tomato	unclear	86.07	85.37
Bra034070.1-P	Field mustard	cytosol	86.07	85.37
Bra029771.1-P	Field mustard	cytosol	86.07	85.37
Bra001306.1-P	Field mustard	cytosol	86.07	85.37
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	85.25	84.55
Solyc05g054810.2.1	Tomato	cytosol	84.43	83.74
PGSC0003DMT400060449	Potato	cytosol	84.43	83.74
KRH36218	Soybean	mitochondrion, nucleus	84.43	83.74
KRG92967	Soybean	cytosol	84.43	83.74
HORVU2Hr1G068120.2	Barley	cytosol	97.54	83.22
AT3G55170.1	Thale cress	cytosol	83.61	82.93
Bra009577.1-P	Field mustard	cytosol	82.79	82.11
Bra028867.1-P	Field mustard	cytosol	81.97	81.3
Zm00001d004349_P001	Maize	cytosol, plastid	68.03	80.58
Zm00001d053550_P001	Maize	cytosol	68.03	80.58
CDY54380	Canola	cytosol	86.07	77.78
CDY41605	Canola	cytosol	85.25	75.91
CDY44711	Canola	cytosol	86.07	75.54
CDY67681	Canola	cytosol	86.07	75.54
GSMUA_Achr4P30580_001	Banana	cytosol	90.98	72.08
AT5G02610.2	Thale cress	cytosol	86.07	71.92
CDY24964	Canola	cytosol	84.43	71.03
GSMUA_Achr10P...	Banana	cytosol, plastid	89.34	70.32
PGSC0003DMT400048945	Potato	cytosol	57.38	70.0
VIT_06s0004g04020.t01	Wine grape	cytosol	84.43	69.59
CDX73982	Canola	mitochondrion	86.07	67.31
CDY07930	Canola	extracellular	86.07	66.88
CDY55408	Canola	cytosol	81.15	65.56
CDY10436	Canola	cytosol	82.79	64.74
GSMUA_Achr10P...	Banana	cytosol	86.07	64.42
CDY07652	Canola	cytosol	83.61	63.75
CDY04860	Canola	extracellular	82.79	59.76
CDY68399	Canola	cytosol	81.97	58.48
GSMUA_Achr2P16120_001	Banana	cytosol	87.7	54.31
GSMUA_Achr8P02690_001	Banana	cytosol	66.39	52.94
CDY07005	Canola	cytosol	65.57	52.29
Solyc01g010960.1.1	Tomato	cytosol	43.44	51.96
Bra000131.1-P	Field mustard	cytosol	85.25	50.98
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.43	49.52
CDX93266	Canola	mitochondrion	36.89	45.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	EnsemblPlantsGene:TraesCS2B01G296200	EnsemblPlants:TraesCS2B01G296200.1	TIGR:cd00427	:

Description

No Description!

Coordinates

chr2B:-:413079449..413080794

Molecular Weight (calculated)

14182.9 Da

IEP (calculated)

11.972

GRAVY (calculated)

-0.791

Length

122 amino acids

Sequence
(BLAST)

001: MARIKVHELR GKNKAELQGQ LKDLKAELSL LRVAKVTGGA PNKLSKIKVV RTSIARVLTV ISQKQKSALR EAYKNKRLPL DLRPKKTRAI RRRLTKHQLS
101: LKTEREKKRE KYFPMRKYAI KA

Best Arabidopsis Sequence Match ( AT2G39390.1 )
(BLAST)

001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.