Factsheet for Bra009577.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028867.1-P	Field mustard	cytosol	96.75	96.75
Bra001306.1-P	Field mustard	cytosol	90.24	90.24
Bra029771.1-P	Field mustard	cytosol	90.24	90.24
Bra034070.1-P	Field mustard	cytosol	90.24	90.24
KRH19753	Soybean	cytosol	86.18	86.18
KRH32348	Soybean	mitochondrion, nucleus	86.18	86.18
EES05112	Sorghum	cytosol	85.37	85.37
EES05110	Sorghum	cytosol	85.37	85.37
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	84.55	84.55
Zm00001d025160_P001	Maize	cytosol	83.74	83.74
TraesCS2D01G277700.1	Wheat	cytosol	82.93	83.61
TraesCS2A01G278600.1	Wheat	cytosol, unclear	82.93	83.61
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	82.11	82.79
Os04t0376000-01	Rice	cytosol	81.3	81.3
Os02t0503400-01	Rice	nucleus	80.49	80.49
CDY10436	Canola	cytosol	100.0	78.85
AT5G02610.2	Thale cress	cytosol	92.68	78.08
Zm00001d004349_P001	Maize	cytosol, plastid	63.41	75.73
Zm00001d053550_P001	Maize	cytosol	63.41	75.73
HORVU2Hr1G068120.2	Barley	cytosol	83.74	72.03
CDY68399	Canola	cytosol	99.19	71.34
Zm00001d004052_P001	Maize	cytosol	85.37	67.74
GSMUA_Achr4P30580_001	Banana	cytosol	83.74	66.88
GSMUA_Achr10P...	Banana	cytosol, plastid	82.93	65.81
GSMUA_Achr10P...	Banana	cytosol	80.49	60.74
Bra000131.1-P	Field mustard	cytosol	92.68	55.88
GSMUA_Achr2P16120_001	Banana	cytosol	80.49	50.25
GSMUA_Achr8P02690_001	Banana	cytosol	60.98	49.02
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.3	48.08

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	EnsemblPlantsGene:Bra009577	EnsemblPlants:Bra009577.1	EnsemblPlants:Bra009577.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M4CZD0	HAMAP:MF_00374	PFAM:PF00831
ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L29_CS
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0002547D0A	:	:	:

Description

AT5G02610 (E=1e-058) | 60S ribosomal protein L35 (RPL35D)

Coordinates

chrA10:-:17273856..17274760

Molecular Weight (calculated)

14410.2 Da

IEP (calculated)

11.672

GRAVY (calculated)

-0.681

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR ERSKTDLQSQ LQEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKLALR EAYKSKKFLP LDLRPKKTRA IRRRLTKHQS
101: SLKTEREKKK EMYFPLRKYA IKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.