Factsheet for Bra034070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001306.1-P	Field mustard	cytosol	100.0	100.0
Bra029771.1-P	Field mustard	cytosol	100.0	100.0
AT3G09500.1	Thale cress	cytosol	94.31	94.31
CDY54380	Canola	cytosol	100.0	91.11
Bra009577.1-P	Field mustard	cytosol	90.24	90.24
Bra028867.1-P	Field mustard	cytosol	89.43	89.43
TraesCS2D01G277700.1	Wheat	cytosol	86.99	87.7
KRH19753	Soybean	cytosol	86.99	86.99
KRH32348	Soybean	mitochondrion, nucleus	86.99	86.99
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	85.37	86.07
TraesCS2A01G278600.1	Wheat	cytosol, unclear	85.37	86.07
EES05110	Sorghum	cytosol	85.37	85.37
EES05112	Sorghum	cytosol	85.37	85.37
Zm00001d025160_P001	Maize	cytosol	83.74	83.74
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	83.74	83.74
Os04t0376000-01	Rice	cytosol	82.93	82.93
Os02t0503400-01	Rice	nucleus	82.11	82.11
Zm00001d004349_P001	Maize	cytosol, plastid	62.6	74.76
Zm00001d053550_P001	Maize	cytosol	62.6	74.76
HORVU2Hr1G068120.2	Barley	cytosol	85.37	73.43
GSMUA_Achr4P30580_001	Banana	cytosol	86.99	69.48
Zm00001d004052_P001	Maize	cytosol	84.55	67.1
GSMUA_Achr10P...	Banana	cytosol, plastid	83.74	66.45
GSMUA_Achr10P...	Banana	cytosol	85.37	64.42
Bra000131.1-P	Field mustard	cytosol	91.06	54.9
GSMUA_Achr8P02690_001	Banana	cytosol	65.85	52.94
GSMUA_Achr2P16120_001	Banana	cytosol	83.74	52.28
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	84.55	50.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	EnsemblPlantsGene:Bra034070	EnsemblPlants:Bra034070.1	EnsemblPlants:Bra034070.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M4ELV1	HAMAP:MF_00374	PFAM:PF00831
ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L29_CS
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI00025405A4	:	:	:

Description

AT3G09500 (E=1e-059) | 60S ribosomal protein L35 (RPL35A)

Coordinates

chrA01:-:27589847..27590506

Molecular Weight (calculated)

14348.0 Da

IEP (calculated)

11.589

GRAVY (calculated)

-0.744

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR DKSKSDLQNQ LQDLKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV TSQKQKSALR EAYKNKKFIP LDLRPKKTRA IRRRLTKHQL
101: SLKTEREKKK EMYFPIRKYA IKV

Best Arabidopsis Sequence Match ( AT3G09500.1 )
(BLAST)

001: MARIKVHELR EKSKSDLQNQ LKELKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV SSQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35A60S ribosomal protein L35-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.