CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
nucleus: 27291164
mitochondrion: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22989	Soybean	cytosol	100.0	100.0
KRH19753	Soybean	cytosol	99.19	99.19
KRH10326	Soybean	endoplasmic reticulum	96.75	96.75
KRG92967	Soybean	cytosol	95.94	95.94
KRH36218	Soybean	mitochondrion, nucleus	95.94	95.94
AT3G09500.1	Thale cress	cytosol	88.62	88.62
Bra001306.1-P	Field mustard	cytosol	86.99	86.99
Bra029771.1-P	Field mustard	cytosol	86.99	86.99
Bra034070.1-P	Field mustard	cytosol	86.99	86.99
Bra009577.1-P	Field mustard	cytosol	86.18	86.18
Bra028867.1-P	Field mustard	cytosol	86.18	86.18
Os02t0503400-01	Rice	nucleus	86.18	86.18
Os04t0376000-01	Rice	cytosol	86.18	86.18
TraesCS2A01G278600.1	Wheat	cytosol, unclear	85.37	86.07
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	85.37	86.07
TraesCS2D01G277700.1	Wheat	cytosol	84.55	85.25
EES05110	Sorghum	cytosol	83.74	83.74
EES05112	Sorghum	cytosol	83.74	83.74
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	82.93	82.93
Zm00001d025160_P001	Maize	cytosol	82.11	82.11
CDY54380	Canola	cytosol	86.99	79.26
CDY41605	Canola	cytosol	86.18	77.37
CDY67681	Canola	cytosol	86.99	76.98
CDY44711	Canola	cytosol	86.99	76.98
AT5G02610.2	Thale cress	cytosol	88.62	74.66
HORVU2Hr1G068120.2	Barley	cytosol	86.18	74.13
Zm00001d053550_P001	Maize	cytosol	61.79	73.79
Zm00001d004349_P001	Maize	cytosol, plastid	61.79	73.79
CDY55408	Canola	cytosol	86.18	70.2
GSMUA_Achr10P...	Banana	cytosol, plastid	86.99	69.03
CDX73982	Canola	mitochondrion	86.99	68.59
CDY07930	Canola	extracellular	86.99	68.15
CDY10436	Canola	cytosol	86.18	67.95
GSMUA_Achr4P30580_001	Banana	cytosol	84.55	67.53
Zm00001d004052_P001	Maize	cytosol	83.74	66.45
GSMUA_Achr10P...	Banana	cytosol	86.99	65.64
CDY04860	Canola	extracellular	87.8	63.91
CDY68399	Canola	cytosol	85.37	61.4
GSMUA_Achr8P02690_001	Banana	cytosol	69.92	56.21
GSMUA_Achr2P16120_001	Banana	cytosol	86.18	53.81
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.37	50.48

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	EntrezGene:100778013	EntrezGene:100789845	MapMan:17.1.2.1.35	EMBL:ACUP02006114
EMBL:ACUP02008450	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G045900	GO:GO:0000463	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	UniProt:I1M4R7	ProteinID:KRH22989.1	EnsemblPlants:KRH32348	ProteinID:KRH32348	ProteinID:KRH32348.1
HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI000233ADF3	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:4095254..4097023

Molecular Weight (calculated)

14321.2 Da

IEP (calculated)

11.509

GRAVY (calculated)

-0.573

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVYELR NKTKAELLNQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV ISQKQKAALR EAYKKKKYLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK ELYFPLRKYA IKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.