CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G09500.1	Thale cress	cytosol	84.67	94.31
CDY54380	Canola	cytosol	89.78	91.11
CDY44711	Canola	cytosol	89.78	88.49
CDY67681	Canola	cytosol	89.05	87.77
TraesCS2D01G277700.1	Wheat	cytosol	77.37	86.89
KRH19753	Soybean	cytosol	77.37	86.18
KRH32348	Soybean	mitochondrion, nucleus	77.37	86.18
EES05112	Sorghum	cytosol	77.37	86.18
EES05110	Sorghum	cytosol	77.37	86.18
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	75.91	85.25
TraesCS2A01G278600.1	Wheat	cytosol, unclear	75.91	85.25
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	75.91	84.55
Zm00001d025160_P001	Maize	cytosol	75.91	84.55
Os04t0376000-01	Rice	cytosol	73.72	82.11
Os02t0503400-01	Rice	nucleus	72.99	81.3
CDX73982	Canola	mitochondrion	89.05	78.21
CDY24964	Canola	cytosol	81.75	77.24
CDY07930	Canola	extracellular	88.32	77.07
Zm00001d004349_P001	Maize	cytosol, plastid	56.93	75.73
Zm00001d053550_P001	Maize	cytosol	56.93	75.73
CDY55408	Canola	cytosol	81.02	73.51
HORVU2Hr1G068120.2	Barley	cytosol	76.64	73.43
CDY10436	Canola	cytosol	83.21	73.08
GSMUA_Achr4P30580_001	Banana	cytosol	78.83	70.13
CDY07652	Canola	cytosol	81.75	70.0
CDY04860	Canola	extracellular	86.13	69.82
Zm00001d004052_P001	Maize	cytosol	76.64	67.74
GSMUA_Achr10P...	Banana	cytosol, plastid	75.91	67.1
CDY68399	Canola	cytosol	83.21	66.67
GSMUA_Achr10P...	Banana	cytosol	76.64	64.42
CDY07005	Canola	cytosol	64.23	57.52
GSMUA_Achr8P02690_001	Banana	cytosol	59.85	53.59
GSMUA_Achr2P16120_001	Banana	cytosol	76.64	53.3
CDX93266	Canola	mitochondrion	37.23	51.0
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.64	50.48

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:A0A078HST0	UniProt:A0A078HST0	EnsemblPlants:CDY41605
ProteinID:CDY41605	ProteinID:CDY41605.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00073254001
HAMAP:MF_00374	PFAM:PF00831	ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35
InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L29_CS	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EDFC68	SEG:seg

Description

BnaC05g43420DBnaC05g43420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HST0]

Coordinates

chrLK032501:-:192361..193464

Molecular Weight (calculated)

15999.1 Da

IEP (calculated)

11.683

GRAVY (calculated)

-0.732

Length

137 amino acids

Sequence
(BLAST)

001: MGFTRPTKET RGFTMARIKV HELRDKSKID LQNQLQELKA ELALLRVAKV TGGAPNKLSK IKVVRKSIAQ VLTVTSQKQK SALREAYKNK KFIPLDLRPK
101: KTRAIRRRLT KHQLSLKTER EKKKEMYFPI RKYAIKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.