CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048945	Potato	cytosol	45.0	45.0
Zm00001d053550_P001	Maize	cytosol	45.0	43.69
Zm00001d004349_P001	Maize	cytosol, plastid	45.0	43.69
AT2G39390.1	Thale cress	cytosol	52.0	42.28
Solyc06g075620.2.1	Tomato	unclear	51.0	41.46
PGSC0003DMT400078146	Potato	cytosol	51.0	41.46
CDY24964	Canola	cytosol	59.0	40.69
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	50.0	40.65
AT3G55170.1	Thale cress	cytosol	49.0	39.84
PGSC0003DMT400077604	Potato	cytosol	49.0	39.84
EES05112	Sorghum	cytosol	49.0	39.84
EES05110	Sorghum	cytosol	49.0	39.84
Zm00001d025160_P001	Maize	cytosol	48.0	39.02
PGSC0003DMT400060449	Potato	cytosol	48.0	39.02
Solyc05g054810.2.1	Tomato	cytosol	48.0	39.02
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	48.0	39.02
VIT_00s0317g00130.t01	Wine grape	cytosol	47.0	38.21
TraesCS2D01G277700.1	Wheat	cytosol	46.0	37.7
TraesCS2A01G278600.1	Wheat	cytosol, unclear	46.0	37.7
CDY07652	Canola	cytosol	60.0	37.5
Os04t0376000-01	Rice	cytosol	46.0	37.4
CDY41605	Canola	cytosol	51.0	37.23
CDY54380	Canola	cytosol	50.0	37.04
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	45.0	36.89
KRG92967	Soybean	cytosol	45.0	36.59
KRH36218	Soybean	mitochondrion, nucleus	45.0	36.59
CDY10436	Canola	cytosol	57.0	36.54
Solyc01g010960.1.1	Tomato	cytosol	37.0	36.27
CDY67681	Canola	cytosol	50.0	35.97
CDY44711	Canola	cytosol	50.0	35.97
Os02t0503400-01	Rice	nucleus	44.0	35.77
CDY55408	Canola	cytosol	53.0	35.1
CDY04860	Canola	extracellular	58.0	34.32
HORVU2Hr1G068120.2	Barley	cytosol	48.0	33.57
CDX73982	Canola	mitochondrion	52.0	33.33
CDY07930	Canola	extracellular	51.0	32.48
GSMUA_Achr4P30580_001	Banana	cytosol	50.0	32.47
VIT_06s0004g04020.t01	Wine grape	cytosol	48.0	32.43
Zm00001d004052_P001	Maize	cytosol	49.0	31.61
CDY68399	Canola	cytosol	53.0	30.99
GSMUA_Achr8P02690_001	Banana	cytosol	46.0	30.07
GSMUA_Achr10P...	Banana	cytosol, plastid	45.0	29.03
GSMUA_Achr10P...	Banana	cytosol	43.0	26.38
CDY07005	Canola	cytosol	37.0	24.18
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.0	22.6
GSMUA_Achr2P16120_001	Banana	cytosol	44.0	22.34

Protein Annotations

Gene3D:1.10.287.310	MapMan:35.2	GO:A0A078DVF2	EnsemblPlants:CDX93266	ProteinID:CDX93266	ProteinID:CDX93266.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00155224001	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	UniParc:UPI0004EC553D	:	:	:	:

Description

BnaC04g46300D

Coordinates

chrLK031875:+:648654..649120

Molecular Weight (calculated)

11425.2 Da

IEP (calculated)

10.789

GRAVY (calculated)

-0.293

Length

100 amino acids

Sequence
(BLAST)

1: MPILKAQLNI KPKIRYKSQA IIVFISLTTP YQGGDAMASI KVHELREKSK TDLSAQLQDF NEVVRKSITQ VLTVISQKQK LALREAYKTK KFLPLDLRPN

Best Arabidopsis Sequence Match ( AT2G39390.1 )
(BLAST)

001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.