Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0317g00130.t01 | Wine grape | cytosol | 77.7 | 93.5 |
| PGSC0003DMT400060449 | Potato | cytosol | 75.68 | 91.06 |
| Solyc05g054810.2.1 | Tomato | cytosol | 75.68 | 91.06 |
| Solyc06g075620.2.1 | Tomato | unclear | 75.0 | 90.24 |
| PGSC0003DMT400078146 | Potato | cytosol | 75.0 | 90.24 |
| Solyc04g010240.2.1 | Tomato | nucleus, plastid, unclear | 75.0 | 90.24 |
| AT2G39390.1 | Thale cress | cytosol | 74.32 | 89.43 |
| PGSC0003DMT400077604 | Potato | cytosol | 74.32 | 89.43 |
| KRH36218 | Soybean | mitochondrion, nucleus | 73.65 | 88.62 |
| KRG92967 | Soybean | cytosol | 73.65 | 88.62 |
| AT3G55170.1 | Thale cress | cytosol | 72.3 | 86.99 |
| EES05112 | Sorghum | cytosol | 71.62 | 86.18 |
| EES05110 | Sorghum | cytosol | 71.62 | 86.18 |
| TraesCS2A01G278600.1 | Wheat | cytosol, unclear | 70.95 | 86.07 |
| Zm00001d016549_P001 | Maize | cytosol, mitochondrion, plasma membrane, plastid | 70.95 | 85.37 |
| Os04t0376000-01 | Rice | cytosol | 70.95 | 85.37 |
| Zm00001d025160_P001 | Maize | cytosol | 70.27 | 84.55 |
| Os02t0503400-01 | Rice | nucleus | 70.27 | 84.55 |
| TraesCS2D01G277700.1 | Wheat | cytosol | 69.59 | 84.43 |
| TraesCS2B01G296200.1 | Wheat | cytosol, golgi, unclear | 69.59 | 84.43 |
| Zm00001d053550_P001 | Maize | cytosol | 53.38 | 76.7 |
| Zm00001d004349_P001 | Maize | cytosol, plastid | 53.38 | 76.7 |
| CDY24964 | Canola | cytosol | 74.32 | 75.86 |
| HORVU2Hr1G068120.2 | Barley | cytosol | 70.95 | 73.43 |
| PGSC0003DMT400048945 | Potato | cytosol | 47.97 | 71.0 |
| GSMUA_Achr4P30580_001 | Banana | cytosol | 72.97 | 70.13 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 72.3 | 69.03 |
| Zm00001d004052_P001 | Maize | cytosol | 71.62 | 68.39 |
| CDY07652 | Canola | cytosol | 72.97 | 67.5 |
| GSMUA_Achr10P... | Banana | cytosol | 69.59 | 63.19 |
| Solyc01g010960.1.1 | Tomato | cytosol | 39.19 | 56.86 |
| CDY07005 | Canola | cytosol | 57.43 | 55.56 |
| GSMUA_Achr8P02690_001 | Banana | cytosol | 55.41 | 53.59 |
| Bra000131.1-P | Field mustard | cytosol | 72.97 | 52.94 |
| GSMUA_Achr2P16120_001 | Banana | cytosol | 69.59 | 52.28 |
| GSMUA_Achr9P03110_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 69.59 | 49.52 |
| CDX93266 | Canola | mitochondrion | 32.43 | 48.0 |
Protein Annotations
| Gene3D:1.10.20.90 | Gene3D:1.10.287.310 | EntrezGene:100246718 | wikigene:100246718 | MapMan:17.1.2.1.35 | ProteinID:CCB43610 |
| ProteinID:CCB43610.1 | ncoils:Coil | UniProt:F6GTU6 | EMBL:FN594951 | GO:GO:0000463 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | EntrezGene:LOC100246718 | wikigene:LOC100246718 | HAMAP:MF_00374 | PFAM:PF00831 |
| PANTHER:PTHR13872 | PANTHER:PTHR13872:SF36 | InterPro:Ribosomal_L29/L35 | InterPro:Ribosomal_L29/L35_sf | SUPFAM:SSF46561 | TIGRFAMs:TIGR00012 |
| UniParc:UPI0002109CE3 | ArrayExpress:VIT_06s0004g04020 | EnsemblPlantsGene:VIT_06s0004g04020 | EnsemblPlants:VIT_06s0004g04020.t01 | RefSeq:XP_002284495 | RefSeq:XP_002284495.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:5004766..5009234
Molecular Weight (calculated)
16987.2 Da
IEP (calculated)
10.947
GRAVY (calculated)
-0.608
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: METFGRECCS FGSEKDAVAD HEDTHMARIK VHELRGKPKA DLLAQLKELK AELALLRVAK VTGGAPNKLS KIKVVRLSIA QVLTVISQKQ KAALREAYKK
101: KKFLPLDLRT KKTRAIRKRL TKHQASLKTE REKKKEMYYP MRKYAIKV
101: KKFLPLDLRT KKTRAIRKRL TKHQASLKTE REKKKEMYYP MRKYAIKV
001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV
101: SLKTEREKKK EMYFPIRKYA IKV
Arabidopsis Description
RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.