Factsheet for Solyc01g010960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048945	Potato	cytosol	55.88	57.0
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	60.78	50.41
Solyc05g054810.2.1	Tomato	cytosol	59.8	49.59
Solyc06g075620.2.1	Tomato	unclear	57.84	47.97
VIT_00s0317g00130.t01	Wine grape	cytosol	56.86	47.15
EES05110	Sorghum	cytosol	55.88	46.34
EES05112	Sorghum	cytosol	55.88	46.34
AT2G39390.1	Thale cress	cytosol	55.88	46.34
AT3G55170.1	Thale cress	cytosol	54.9	45.53
Zm00001d025160_P001	Maize	cytosol	54.9	45.53
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	54.9	45.53
KRH36218	Soybean	mitochondrion, nucleus	53.92	44.72
KRG92967	Soybean	cytosol	53.92	44.72
Zm00001d053550_P001	Maize	cytosol	45.1	44.66
Zm00001d004349_P001	Maize	cytosol, plastid	45.1	44.66
TraesCS2D01G277700.1	Wheat	cytosol	52.94	44.26
TraesCS2A01G278600.1	Wheat	cytosol, unclear	51.96	43.44
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	51.96	43.44
Os04t0376000-01	Rice	cytosol	51.96	43.09
Os02t0503400-01	Rice	nucleus	50.98	42.28
VIT_06s0004g04020.t01	Wine grape	cytosol	56.86	39.19
CDY24964	Canola	cytosol	54.9	38.62
HORVU2Hr1G068120.2	Barley	cytosol	51.96	37.06
CDX93266	Canola	mitochondrion	36.27	37.0
Zm00001d004052_P001	Maize	cytosol	55.88	36.77
GSMUA_Achr10P...	Banana	cytosol, plastid	53.92	35.48
CDY07652	Canola	cytosol	54.9	35.0
GSMUA_Achr4P30580_001	Banana	cytosol	51.96	34.42
GSMUA_Achr8P02690_001	Banana	cytosol	49.02	32.68
GSMUA_Achr10P...	Banana	cytosol	51.96	32.52
Bra000131.1-P	Field mustard	cytosol	54.9	27.45
GSMUA_Achr2P16120_001	Banana	cytosol	51.96	26.9
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	52.94	25.96
CDY07005	Canola	cytosol	35.29	23.53

Protein Annotations

Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:GO:0000463	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
UniProt:K4ATT9	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	EnsemblPlantsGene:Solyc01g010960.1
EnsemblPlants:Solyc01g010960.1.1	UniParc:UPI0002761EDA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:6590929..6591288

Molecular Weight (calculated)

11480.3 Da

IEP (calculated)

10.835

GRAVY (calculated)

-0.347

Length

102 amino acids

Sequence
(BLAST)

001: MARIKIHELR NKSKIDLLVT GGAPNKLSKI KVERLSIAQV FTVISQKQES ALREVYKKKK YLTLTKSLAR FDFKVIKYGC AVAKGCCCFE GGNKTSDGAR
101: RR

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.