Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G09500.1 | Thale cress | cytosol | 95.94 | 95.94 |
| AT2G39390.1 | Thale cress | cytosol | 94.31 | 94.31 |
| PGSC0003DMT400060449 | Potato | cytosol | 89.43 | 89.43 |
| Solyc05g054810.2.1 | Tomato | cytosol | 89.43 | 89.43 |
| Solyc04g010240.2.1 | Tomato | nucleus, plastid, unclear | 89.43 | 89.43 |
| PGSC0003DMT400077604 | Potato | cytosol | 88.62 | 88.62 |
| VIT_00s0317g00130.t01 | Wine grape | cytosol | 87.8 | 87.8 |
| Solyc06g075620.2.1 | Tomato | unclear | 87.8 | 87.8 |
| PGSC0003DMT400078146 | Potato | cytosol | 87.8 | 87.8 |
| KRH36218 | Soybean | mitochondrion, nucleus | 86.18 | 86.18 |
| KRG92967 | Soybean | cytosol | 86.18 | 86.18 |
| EES05110 | Sorghum | cytosol | 85.37 | 85.37 |
| EES05112 | Sorghum | cytosol | 85.37 | 85.37 |
| TraesCS2D01G277700.1 | Wheat | cytosol | 84.55 | 85.25 |
| Zm00001d016549_P001 | Maize | cytosol, mitochondrion, plasma membrane, plastid | 84.55 | 84.55 |
| Zm00001d025160_P001 | Maize | cytosol | 83.74 | 83.74 |
| TraesCS2A01G278600.1 | Wheat | cytosol, unclear | 82.93 | 83.61 |
| TraesCS2B01G296200.1 | Wheat | cytosol, golgi, unclear | 82.93 | 83.61 |
| Os04t0376000-01 | Rice | cytosol | 81.3 | 81.3 |
| Os02t0503400-01 | Rice | nucleus | 80.49 | 80.49 |
| AT5G02610.2 | Thale cress | cytosol | 93.5 | 78.77 |
| CDY24964 | Canola | cytosol | 91.87 | 77.93 |
| Zm00001d053550_P001 | Maize | cytosol | 64.23 | 76.7 |
| Zm00001d004349_P001 | Maize | cytosol, plastid | 64.23 | 76.7 |
| VIT_06s0004g04020.t01 | Wine grape | cytosol | 86.99 | 72.3 |
| HORVU2Hr1G068120.2 | Barley | cytosol | 83.74 | 72.03 |
| CDY07652 | Canola | cytosol | 91.06 | 70.0 |
| PGSC0003DMT400048945 | Potato | cytosol | 56.91 | 70.0 |
| Zm00001d004052_P001 | Maize | cytosol | 84.55 | 67.1 |
| GSMUA_Achr4P30580_001 | Banana | cytosol | 82.93 | 66.23 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 82.11 | 65.16 |
| GSMUA_Achr10P... | Banana | cytosol | 81.3 | 61.35 |
| CDY07005 | Canola | cytosol | 69.11 | 55.56 |
| Bra000131.1-P | Field mustard | cytosol | 91.87 | 55.39 |
| Solyc01g010960.1.1 | Tomato | cytosol | 45.53 | 54.9 |
| GSMUA_Achr8P02690_001 | Banana | cytosol | 62.6 | 50.33 |
| GSMUA_Achr2P16120_001 | Banana | cytosol | 79.67 | 49.75 |
| CDX93266 | Canola | mitochondrion | 39.84 | 49.0 |
| GSMUA_Achr9P03110_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 81.3 | 48.08 |
Protein Annotations
| Gene3D:1.10.20.90 | Gene3D:1.10.287.310 | MapMan:17.1.2.1.35 | EntrezGene:824683 | ProteinID:AEE79348.1 | ProteinID:AEE79349.1 |
| EMBL:AK227739 | ProteinID:ANM65474.1 | ArrayExpress:AT3G55170 | EnsemblPlantsGene:AT3G55170 | RefSeq:AT3G55170 | TAIR:AT3G55170 |
| RefSeq:AT3G55170-TAIR-G | EnsemblPlants:AT3G55170.1 | TAIR:AT3G55170.1 | EMBL:BT006384 | ProteinID:CAB75751.1 | ncoils:Coil |
| GO:GO:0000463 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | HAMAP:MF_00374 |
| RefSeq:NP_001319756.1 | RefSeq:NP_191077.1 | RefSeq:NP_974440.1 | PFAM:PF00831 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00579 | PANTHER:PTHR13872 |
| PANTHER:PTHR13872:SF36 | UniProt:Q9M3D2 | InterPro:Ribosomal_L29/L35 | InterPro:Ribosomal_L29/L35_sf | InterPro:Ribosomal_L29_CS | SUPFAM:SSF46561 |
| TIGRFAMs:TIGR00012 | UniParc:UPI00000A18DF | SEG:seg | : | : | : |
Description
RPL35C60S ribosomal protein L35-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3D2]
Coordinates
chr3:-:20452910..20454530
Molecular Weight (calculated)
14177.8 Da
IEP (calculated)
11.604
GRAVY (calculated)
-0.754
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MARIKVHELR DKSKSDLSTQ LKELKAELAS LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV SSQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK DMYFPIRKYA IKV
101: SLKTEREKKK DMYFPIRKYA IKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.