Factsheet for PGSC0003DMT400048945

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077604	Potato	cytosol	78.0	63.41
Zm00001d053550_P001	Maize	cytosol	65.0	63.11
Zm00001d004349_P001	Maize	cytosol, plastid	65.0	63.11
PGSC0003DMT400078146	Potato	cytosol	77.0	62.6
PGSC0003DMT400060449	Potato	cytosol	76.0	61.79
VIT_00s0317g00130.t01	Wine grape	cytosol	72.0	58.54
EES05110	Sorghum	cytosol	72.0	58.54
EES05112	Sorghum	cytosol	72.0	58.54
TraesCS2D01G277700.1	Wheat	cytosol	71.0	58.2
KRH36218	Soybean	mitochondrion, nucleus	71.0	57.72
Zm00001d025160_P001	Maize	cytosol	71.0	57.72
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	71.0	57.72
AT2G39390.1	Thale cress	cytosol	71.0	57.72
KRG92967	Soybean	cytosol	71.0	57.72
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	70.0	57.38
TraesCS2A01G278600.1	Wheat	cytosol, unclear	70.0	57.38
AT3G55170.1	Thale cress	cytosol	70.0	56.91
Os04t0376000-01	Rice	cytosol	70.0	56.91
Solyc01g010960.1.1	Tomato	cytosol	57.0	55.88
Os02t0503400-01	Rice	nucleus	67.0	54.47
HORVU2Hr1G068120.2	Barley	cytosol	71.0	49.65
CDY24964	Canola	cytosol	71.0	48.97
VIT_06s0004g04020.t01	Wine grape	cytosol	71.0	47.97
Zm00001d004052_P001	Maize	cytosol	70.0	45.16
CDX93266	Canola	mitochondrion	45.0	45.0
GSMUA_Achr4P30580_001	Banana	cytosol	69.0	44.81
GSMUA_Achr10P...	Banana	cytosol, plastid	69.0	44.52
CDY07652	Canola	cytosol	70.0	43.75
GSMUA_Achr8P02690_001	Banana	cytosol	63.0	41.18
GSMUA_Achr10P...	Banana	cytosol	66.0	40.49
Bra000131.1-P	Field mustard	cytosol	72.0	35.29
GSMUA_Achr2P16120_001	Banana	cytosol	67.0	34.01
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.0	33.17
CDY07005	Canola	cytosol	49.0	32.03

Protein Annotations

Gene3D:1.10.287.310	EntrezGene:102594168	MapMan:17.1.2.1.35	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M1BN27
HAMAP:MF_00374	PFAM:PF00831	EnsemblPlantsGene:PGSC0003DMG400019019	PGSC:PGSC0003DMG400019019	EnsemblPlants:PGSC0003DMT400048945	PANTHER:PTHR13872
PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI00029485F1
RefSeq:XP_006360906.1	:	:	:	:	:

Description

60S ribosomal protein L35 [Source:PGSC_GENE;Acc:PGSC0003DMG400019019]

Coordinates

chr3:-:30852353..30852655

Molecular Weight (calculated)

11055.9 Da

IEP (calculated)

11.096

GRAVY (calculated)

-0.054

Length

100 amino acids

Sequence
(BLAST)

1: MARIKVHELR NKSKTDLLAQ LKDLKAELSL LHVAKVTSGA PNKLSKIKVI RLSIAQVLTV ISQKQKSALR EVYKNKKYLP LTKSLARFGC AVARSDCAVA

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.