CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36218	Soybean	mitochondrion, nucleus	100.0	100.0
KRH32348	Soybean	mitochondrion, nucleus	95.94	95.94
KRH22989	Soybean	cytosol	95.94	95.94
KRH19753	Soybean	cytosol	95.12	95.12
KRH10326	Soybean	endoplasmic reticulum	93.5	93.5
Solyc06g075620.2.1	Tomato	unclear	91.87	91.87
Solyc05g054810.2.1	Tomato	cytosol	91.87	91.87
PGSC0003DMT400060449	Potato	cytosol	91.87	91.87
VIT_00s0317g00130.t01	Wine grape	cytosol	91.06	91.06
PGSC0003DMT400078146	Potato	cytosol	90.24	90.24
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	89.43	89.43
AT2G39390.1	Thale cress	cytosol	88.62	88.62
PGSC0003DMT400077604	Potato	cytosol	88.62	88.62
AT3G55170.1	Thale cress	cytosol	86.18	86.18
TraesCS2A01G278600.1	Wheat	cytosol, unclear	85.37	86.07
TraesCS2D01G277700.1	Wheat	cytosol	84.55	85.25
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	83.74	84.43
Os02t0503400-01	Rice	nucleus	82.93	82.93
Os04t0376000-01	Rice	cytosol	82.93	82.93
EES05112	Sorghum	cytosol	82.11	82.11
EES05110	Sorghum	cytosol	82.11	82.11
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	81.3	81.3
Zm00001d025160_P001	Maize	cytosol	80.49	80.49
CDY24964	Canola	cytosol	87.8	74.48
VIT_06s0004g04020.t01	Wine grape	cytosol	88.62	73.65
HORVU2Hr1G068120.2	Barley	cytosol	84.55	72.73
Zm00001d053550_P001	Maize	cytosol	60.16	71.84
Zm00001d004349_P001	Maize	cytosol, plastid	60.16	71.84
PGSC0003DMT400048945	Potato	cytosol	57.72	71.0
CDY07652	Canola	cytosol	86.99	66.88
GSMUA_Achr10P...	Banana	cytosol, plastid	83.74	66.45
GSMUA_Achr4P30580_001	Banana	cytosol	82.93	66.23
Zm00001d004052_P001	Maize	cytosol	82.11	65.16
GSMUA_Achr10P...	Banana	cytosol	85.37	64.42
CDY07005	Canola	cytosol	67.48	54.25
Solyc01g010960.1.1	Tomato	cytosol	44.72	53.92
GSMUA_Achr8P02690_001	Banana	cytosol	66.67	53.59
Bra000131.1-P	Field mustard	cytosol	87.8	52.94
GSMUA_Achr2P16120_001	Banana	cytosol	82.93	51.78
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.11	48.56
CDX93266	Canola	mitochondrion	36.59	45.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	EntrezGene:100305671	EntrezGene:100801539	MapMan:17.1.2.1.35	EMBL:ACUP02006721
EMBL:ACUP02012773	EMBL:BT089399	UniProt:C6SW56	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G240700	GO:GO:0000463
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	EnsemblPlants:KRG92967	ProteinID:KRG92967	ProteinID:KRG92967.1
ProteinID:KRH36218.1	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35
InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0001B15A18	:	:

Description

hypothetical protein

Coordinates

chr20:+:47185206..47187275

Molecular Weight (calculated)

14320.1 Da

IEP (calculated)

11.493

GRAVY (calculated)

-0.592

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVYELR QKTKADLLNQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLNIAQVLTV ISQKQKAALR DAYKNKKYLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK ELYFPLRKYA IKV

Best Arabidopsis Sequence Match ( AT3G09500.1 )
(BLAST)

001: MARIKVHELR EKSKSDLQNQ LKELKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV SSQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35A60S ribosomal protein L35-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.