Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060449 | Potato | cytosol | 92.68 | 92.68 |
| Solyc05g054810.2.1 | Tomato | cytosol | 92.68 | 92.68 |
| Solyc04g010240.2.1 | Tomato | nucleus, plastid, unclear | 91.87 | 91.87 |
| KRH36218 | Soybean | mitochondrion, nucleus | 91.06 | 91.06 |
| KRG92967 | Soybean | cytosol | 91.06 | 91.06 |
| PGSC0003DMT400077604 | Potato | cytosol | 91.06 | 91.06 |
| PGSC0003DMT400078146 | Potato | cytosol | 91.06 | 91.06 |
| Solyc06g075620.2.1 | Tomato | unclear | 91.06 | 91.06 |
| AT2G39390.1 | Thale cress | cytosol | 90.24 | 90.24 |
| TraesCS2A01G278600.1 | Wheat | cytosol, unclear | 88.62 | 89.34 |
| AT3G55170.1 | Thale cress | cytosol | 87.8 | 87.8 |
| TraesCS2B01G296200.1 | Wheat | cytosol, golgi, unclear | 86.99 | 87.7 |
| TraesCS2D01G277700.1 | Wheat | cytosol | 86.99 | 87.7 |
| EES05112 | Sorghum | cytosol | 86.99 | 86.99 |
| EES05110 | Sorghum | cytosol | 86.99 | 86.99 |
| Zm00001d016549_P001 | Maize | cytosol, mitochondrion, plasma membrane, plastid | 86.18 | 86.18 |
| Os04t0376000-01 | Rice | cytosol | 86.18 | 86.18 |
| Zm00001d025160_P001 | Maize | cytosol | 85.37 | 85.37 |
| Os02t0503400-01 | Rice | nucleus | 85.37 | 85.37 |
| VIT_06s0004g04020.t01 | Wine grape | cytosol | 93.5 | 77.7 |
| Zm00001d053550_P001 | Maize | cytosol | 63.41 | 75.73 |
| Zm00001d004349_P001 | Maize | cytosol, plastid | 63.41 | 75.73 |
| HORVU2Hr1G068120.2 | Barley | cytosol | 87.8 | 75.52 |
| CDY24964 | Canola | cytosol | 87.8 | 74.48 |
| PGSC0003DMT400048945 | Potato | cytosol | 58.54 | 72.0 |
| Zm00001d004052_P001 | Maize | cytosol | 86.99 | 69.03 |
| GSMUA_Achr4P30580_001 | Banana | cytosol | 86.18 | 68.83 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 86.18 | 68.39 |
| CDY07652 | Canola | cytosol | 86.99 | 66.88 |
| GSMUA_Achr10P... | Banana | cytosol | 84.55 | 63.8 |
| Solyc01g010960.1.1 | Tomato | cytosol | 47.15 | 56.86 |
| GSMUA_Achr8P02690_001 | Banana | cytosol | 66.67 | 53.59 |
| CDY07005 | Canola | cytosol | 65.85 | 52.94 |
| Bra000131.1-P | Field mustard | cytosol | 87.8 | 52.94 |
| GSMUA_Achr2P16120_001 | Banana | cytosol | 84.55 | 52.79 |
| GSMUA_Achr9P03110_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 82.93 | 49.04 |
| CDX93266 | Canola | mitochondrion | 38.21 | 47.0 |
Protein Annotations
| Gene3D:1.10.20.90 | Gene3D:1.10.287.310 | EntrezGene:100265729 | wikigene:100265729 | MapMan:17.1.2.1.35 | ProteinID:CCB57376 |
| ProteinID:CCB57376.1 | ncoils:Coil | UniProt:F6HRR8 | EMBL:FN596030 | GO:GO:0000463 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | EntrezGene:LOC100265729 | wikigene:LOC100265729 | HAMAP:MF_00374 | PFAM:PF00831 |
| PANTHER:PTHR13872 | PANTHER:PTHR13872:SF36 | InterPro:Ribosomal_L29/L35 | InterPro:Ribosomal_L29/L35_sf | SUPFAM:SSF46561 | TIGR:TC55601 |
| TIGRFAMs:TIGR00012 | UniParc:UPI0001984792 | ArrayExpress:VIT_00s0317g00130 | EnsemblPlantsGene:VIT_00s0317g00130 | EnsemblPlants:VIT_00s0317g00130.t01 | RefSeq:XP_002282289 |
| RefSeq:XP_002282289.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:23051399..23053284
Molecular Weight (calculated)
14273.2 Da
IEP (calculated)
11.592
GRAVY (calculated)
-0.509
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MARIKVHELR GKTKADLLVQ LKELKAELAL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV ISQKQKAALR EAYKNKKYLP LDLRPKKTRA IRKRLTKHQV
101: SLKTEREKKR EMYFPMRKYA IKV
101: SLKTEREKKR EMYFPMRKYA IKV
001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV
101: SLKTEREKKK EMYFPIRKYA IKV
Arabidopsis Description
RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.