Factsheet for GSMUA_Achr4P30580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	72.08	90.98
TraesCS2A01G278600.1	Wheat	cytosol, unclear	71.43	90.16
EES05110	Sorghum	cytosol	71.43	89.43
EES05112	Sorghum	cytosol	71.43	89.43
Os04t0376000-01	Rice	cytosol	71.43	89.43
TraesCS2D01G277700.1	Wheat	cytosol	70.78	89.34
PGSC0003DMT400078146	Potato	cytosol	70.78	88.62
Os02t0503400-01	Rice	nucleus	70.78	88.62
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	70.78	88.62
Zm00001d025160_P001	Maize	cytosol	70.13	87.8
Solyc06g075620.2.1	Tomato	unclear	69.48	86.99
Bra034070.1-P	Field mustard	cytosol	69.48	86.99
Bra029771.1-P	Field mustard	cytosol	69.48	86.99
PGSC0003DMT400077604	Potato	cytosol	69.48	86.99
Bra001306.1-P	Field mustard	cytosol	69.48	86.99
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	68.83	86.18
VIT_00s0317g00130.t01	Wine grape	cytosol	68.83	86.18
Solyc05g054810.2.1	Tomato	cytosol	68.18	85.37
PGSC0003DMT400060449	Potato	cytosol	68.18	85.37
KRH10326	Soybean	endoplasmic reticulum	68.18	85.37
AT2G39390.1	Thale cress	cytosol	68.18	85.37
AT3G09500.1	Thale cress	cytosol	68.18	85.37
KRH32348	Soybean	mitochondrion, nucleus	67.53	84.55
KRH19753	Soybean	cytosol	67.53	84.55
KRH22989	Soybean	cytosol	67.53	84.55
Bra009577.1-P	Field mustard	cytosol	66.88	83.74
KRH36218	Soybean	mitochondrion, nucleus	66.23	82.93
KRG92967	Soybean	cytosol	66.23	82.93
AT3G55170.1	Thale cress	cytosol	66.23	82.93
Bra028867.1-P	Field mustard	cytosol	65.58	82.11
CDY54380	Canola	cytosol	70.13	80.0
CDY67681	Canola	cytosol	72.08	79.86
CDY44711	Canola	cytosol	72.08	79.86
HORVU2Hr1G068120.2	Barley	cytosol	73.38	79.02
CDY41605	Canola	cytosol	70.13	78.83
Zm00001d004349_P001	Maize	cytosol, plastid	52.6	78.64
Zm00001d053550_P001	Maize	cytosol	52.6	78.64
GSMUA_Achr10P...	Banana	cytosol, plastid	76.62	76.13
CDY24964	Canola	cytosol	69.48	73.79
CDX73982	Canola	mitochondrion	74.03	73.08
VIT_06s0004g04020.t01	Wine grape	cytosol	70.13	72.97
AT5G02610.2	Thale cress	cytosol	68.18	71.92
Zm00001d004052_P001	Maize	cytosol	71.43	70.97
CDY07930	Canola	extracellular	70.78	69.43
GSMUA_Achr10P...	Banana	cytosol	73.38	69.33
PGSC0003DMT400048945	Potato	cytosol	44.81	69.0
CDY55408	Canola	cytosol	66.88	68.21
CDY10436	Canola	cytosol	68.18	67.31
CDY07652	Canola	cytosol	68.83	66.25
GSMUA_Achr2P16120_001	Banana	cytosol	79.87	62.44
CDY04860	Canola	extracellular	66.88	60.95
CDY68399	Canola	cytosol	66.23	59.65
GSMUA_Achr8P02690_001	Banana	cytosol	57.14	57.52
CDY07005	Canola	cytosol	54.55	54.9
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.38	54.33
Solyc01g010960.1.1	Tomato	cytosol	34.42	51.96
Bra000131.1-P	Field mustard	cytosol	68.83	51.96
CDX93266	Canola	mitochondrion	32.47	50.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr4G30580_001	EnsemblPlants:GSMUA_Achr4P30580_001	EnsemblPlants:GSMUA_Achr4T30580_001	UniProt:M0STH0	HAMAP:MF_00374	PFAM:PF00831
PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012
UniParc:UPI000295922D	SEG:seg	:	:	:	:

Description

60S ribosomal protein L35 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30580_001]

Coordinates

chr4:-:28092305..28094833

Molecular Weight (calculated)

17766.3 Da

IEP (calculated)

11.809

GRAVY (calculated)

-0.800

Length

154 amino acids

Sequence
(BLAST)

001: MNYNIMNCLG FARGGSGRGR KRRRGRGDSI PMARIKVHEL RGKSKAELQA QLKDLKNELS LLRVAKVTGG APNKLSKIKV VRVSIARVLT VISQKQKEAL
101: REAYKNKKFI PLDLRPKKTR AIRHRLTKHQ DSLKTEREKK KEMYFPMRKY AIKA

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.