CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001306.1-P	Field mustard	cytosol	78.85	100.0
AT3G09500.1	Thale cress	cytosol	74.36	94.31
CDY54380	Canola	cytosol	79.49	91.85
CDY44711	Canola	cytosol	80.77	90.65
CDY67681	Canola	cytosol	80.13	89.93
CDY41605	Canola	cytosol	78.21	89.05
TraesCS2D01G277700.1	Wheat	cytosol	68.59	87.7
KRH19753	Soybean	cytosol	68.59	86.99
KRH32348	Soybean	mitochondrion, nucleus	68.59	86.99
TraesCS2A01G278600.1	Wheat	cytosol, unclear	67.31	86.07
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	67.31	86.07
EES05112	Sorghum	cytosol	67.31	85.37
EES05110	Sorghum	cytosol	67.31	85.37
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	66.03	83.74
Zm00001d025160_P001	Maize	cytosol	66.03	83.74
Os04t0376000-01	Rice	cytosol	65.38	82.93
Os02t0503400-01	Rice	nucleus	64.74	82.11
CDY07930	Canola	extracellular	80.13	79.62
CDY24964	Canola	cytosol	73.08	78.62
HORVU2Hr1G068120.2	Barley	cytosol	68.59	74.83
Zm00001d053550_P001	Maize	cytosol	49.36	74.76
Zm00001d004349_P001	Maize	cytosol, plastid	49.36	74.76
CDY55408	Canola	cytosol	71.79	74.17
GSMUA_Achr4P30580_001	Banana	cytosol	73.08	74.03
CDY10436	Canola	cytosol	73.08	73.08
CDY07652	Canola	cytosol	73.72	71.88
GSMUA_Achr10P...	Banana	cytosol, plastid	69.87	70.32
GSMUA_Achr10P...	Banana	cytosol	70.51	67.48
Zm00001d004052_P001	Maize	cytosol	66.67	67.1
CDY04860	Canola	extracellular	72.44	66.86
CDY68399	Canola	cytosol	71.15	64.91
CDY07005	Canola	cytosol	56.41	57.52
GSMUA_Achr8P02690_001	Banana	cytosol	53.21	54.25
GSMUA_Achr2P16120_001	Banana	cytosol	67.95	53.81
CDX93266	Canola	mitochondrion	33.33	52.0
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.31	50.48

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:A0A078CAV4	EnsemblPlants:CDX73982	ProteinID:CDX73982
ProteinID:CDX73982.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00111715001	HAMAP:MF_00374
PFAM:PF00831	ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
InterPro:Ribosomal_L29_CS	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EDE3CF	:	:

Description

BnaA03g30650D

Coordinates

chrLK031800:+:805142..806269

Molecular Weight (calculated)

18278.8 Da

IEP (calculated)

11.728

GRAVY (calculated)

-0.682

Length

156 amino acids

Sequence
(BLAST)

001: MGFIRPIKET RGFILFSLSR SLCFRRNRSE DNTMARIKVH ELRDKSKSDL QNQLQDLKAE LALLRVAKVT GGAPNKLSKI KVVRKSIAQV LTVTSQKQKS
101: ALREAYKNKK FIPLDLRPKK TRAIRRRLTK HQLSLKTERE KKKEMYFPIR KYAIKV

Best Arabidopsis Sequence Match ( AT3G09500.1 )
(BLAST)

001: MARIKVHELR EKSKSDLQNQ LKELKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV SSQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35A60S ribosomal protein L35-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF53]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.