CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009577.1-P	Field mustard	cytosol	71.34	99.19
KRH19753	Soybean	cytosol	61.4	85.37
KRH32348	Soybean	mitochondrion, nucleus	61.4	85.37
CDY10436	Canola	cytosol	77.19	84.62
EES05112	Sorghum	cytosol	60.82	84.55
EES05110	Sorghum	cytosol	60.82	84.55
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	60.23	83.74
CDY54380	Canola	cytosol	66.08	83.7
CDY41605	Canola	cytosol	66.67	83.21
Zm00001d025160_P001	Maize	cytosol	59.65	82.93
TraesCS2D01G277700.1	Wheat	cytosol	59.06	82.79
TraesCS2A01G278600.1	Wheat	cytosol, unclear	59.06	82.79
CDY67681	Canola	cytosol	66.67	82.01
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	58.48	81.97
CDY44711	Canola	cytosol	65.5	80.58
Os04t0376000-01	Rice	cytosol	57.89	80.49
Os02t0503400-01	Rice	nucleus	57.31	79.67
CDY24964	Canola	cytosol	67.25	79.31
CDY55408	Canola	cytosol	69.01	78.15
AT5G02610.2	Thale cress	cytosol	66.08	77.4
CDY04860	Canola	extracellular	74.85	75.74
Zm00001d004349_P001	Maize	cytosol, plastid	45.03	74.76
Zm00001d053550_P001	Maize	cytosol	45.03	74.76
CDY07652	Canola	cytosol	68.42	73.12
HORVU2Hr1G068120.2	Barley	cytosol	60.82	72.73
CDX73982	Canola	mitochondrion	64.91	71.15
CDY07930	Canola	extracellular	64.91	70.7
Zm00001d004052_P001	Maize	cytosol	60.82	67.1
GSMUA_Achr10P...	Banana	cytosol, plastid	60.23	66.45
GSMUA_Achr4P30580_001	Banana	cytosol	59.65	66.23
GSMUA_Achr10P...	Banana	cytosol	57.31	60.12
CDY07005	Canola	cytosol	53.22	59.48
CDX93266	Canola	mitochondrion	30.99	53.0
GSMUA_Achr2P16120_001	Banana	cytosol	58.48	50.76
GSMUA_Achr8P02690_001	Banana	cytosol	45.03	50.33
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	59.06	48.56

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:A0A078JNQ9	UniProt:A0A078JNQ9	EnsemblPlants:CDY68399
ProteinID:CDY68399	ProteinID:CDY68399.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00074139001
HAMAP:MF_00374	PFAM:PF00831	ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35
InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L29_CS	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EEC122	:

Description

BnaAnng27130DBnaAnng27130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNQ9]

Coordinates

chrLK037275:-:1105..2468

Molecular Weight (calculated)

20020.9 Da

IEP (calculated)

10.997

GRAVY (calculated)

-0.421

Length

171 amino acids

Sequence
(BLAST)

001: MLFWGLIDEL IPLCFHYSTF LSIFSPTNTT HEVVLQHLEP EFDTSKLTMS RIKVHELRER SKTDLQSQLQ EFKAELALLR VAKVTGGAPN KLSKIKVVRK
101: SIAQVLTVIS QKQKLALREA YKSKKFLPLD LRPKKTRAIR RRLTKHQSSL KTEREKKKEM YFPLRKYAIK V

Best Arabidopsis Sequence Match ( AT2G39390.1 )
(BLAST)

001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.