CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028867.1-P	Field mustard	cytosol	71.01	97.56
KRH32348	Soybean	mitochondrion, nucleus	63.91	87.8
KRH19753	Soybean	cytosol	63.31	86.99
CDY41605	Canola	cytosol	69.82	86.13
EES05112	Sorghum	cytosol	62.13	85.37
EES05110	Sorghum	cytosol	62.13	85.37
CDY54380	Canola	cytosol	68.05	85.19
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	61.54	84.55
Zm00001d025160_P001	Maize	cytosol	60.95	83.74
TraesCS2A01G278600.1	Wheat	cytosol, unclear	60.35	83.61
TraesCS2D01G277700.1	Wheat	cytosol	60.35	83.61
CDY67681	Canola	cytosol	68.64	83.45
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	59.76	82.79
CDY44711	Canola	cytosol	68.05	82.73
CDY10436	Canola	cytosol	75.74	82.05
CDY55408	Canola	cytosol	72.78	81.46
CDY24964	Canola	cytosol	69.82	81.38
Os04t0376000-01	Rice	cytosol	59.17	81.3
Os02t0503400-01	Rice	nucleus	58.58	80.49
AT5G02610.2	Thale cress	cytosol	68.64	79.45
Zm00001d004349_P001	Maize	cytosol, plastid	46.15	75.73
Zm00001d053550_P001	Maize	cytosol	46.15	75.73
CDY68399	Canola	cytosol	75.74	74.85
CDY07652	Canola	cytosol	69.23	73.12
CDX73982	Canola	mitochondrion	66.86	72.44
HORVU2Hr1G068120.2	Barley	cytosol	60.95	72.03
CDY07930	Canola	extracellular	66.86	71.97
Zm00001d004052_P001	Maize	cytosol	62.13	67.74
GSMUA_Achr10P...	Banana	cytosol, plastid	61.54	67.1
GSMUA_Achr4P30580_001	Banana	cytosol	60.95	66.88
GSMUA_Achr10P...	Banana	cytosol	60.35	62.58
CDY07005	Canola	cytosol	55.62	61.44
CDX93266	Canola	mitochondrion	34.32	58.0
GSMUA_Achr2P16120_001	Banana	cytosol	62.13	53.3
GSMUA_Achr8P02690_001	Banana	cytosol	45.56	50.33
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.95	49.52

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:A0A078ESE5	EnsemblPlants:CDY04860	ProteinID:CDY04860
ProteinID:CDY04860.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00119577001	HAMAP:MF_00374
PFAM:PF00831	ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
InterPro:Ribosomal_L29_CS	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EE26B6	SEG:seg	:

Description

BnaAnng00420D

Coordinates

chrLK031958:+:420467..421881

Molecular Weight (calculated)

19552.3 Da

IEP (calculated)

11.323

GRAVY (calculated)

-0.536

Length

169 amino acids

Sequence
(BLAST)

001: MRLLGILRNR VKLFCSESFD GFVSYSKEEA AAPEFTTTTT TTSKLTMARI KVHELRERSK TDLQNQLQEF KAELALLRVA KVTGGAPNKL SKIKVVRKSI
101: AQVLTVISQK QKLALREAYK SKKFLPLDLR PKKTRAIRRR LTKHQASLKT EREKKKEMYF PLRKYAIKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.