CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028867.1-P	Field mustard	cytosol	78.15	95.94
KRH32348	Soybean	mitochondrion, nucleus	70.2	86.18
KRH19753	Soybean	cytosol	69.54	85.37
EES05112	Sorghum	cytosol	68.21	83.74
EES05110	Sorghum	cytosol	68.21	83.74
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	67.55	82.93
CDY54380	Canola	cytosol	73.51	82.22
Zm00001d025160_P001	Maize	cytosol	66.89	82.11
TraesCS2A01G278600.1	Wheat	cytosol, unclear	66.23	81.97
TraesCS2D01G277700.1	Wheat	cytosol	66.23	81.97
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	65.56	81.15
CDY41605	Canola	cytosol	73.51	81.02
CDY67681	Canola	cytosol	74.17	80.58
CDY44711	Canola	cytosol	73.51	79.86
Os04t0376000-01	Rice	cytosol	64.9	79.67
CDY24964	Canola	cytosol	76.16	79.31
Os02t0503400-01	Rice	nucleus	64.24	78.86
AT5G02610.2	Thale cress	cytosol	75.5	78.08
CDY10436	Canola	cytosol	79.47	76.92
Zm00001d004349_P001	Maize	cytosol, plastid	50.99	74.76
Zm00001d053550_P001	Maize	cytosol	50.99	74.76
CDY07930	Canola	extracellular	76.16	73.25
CDY07652	Canola	cytosol	77.48	73.12
CDY04860	Canola	extracellular	81.46	72.78
CDX73982	Canola	mitochondrion	74.17	71.79
HORVU2Hr1G068120.2	Barley	cytosol	66.89	70.63
CDY68399	Canola	cytosol	78.15	69.01
GSMUA_Achr4P30580_001	Banana	cytosol	68.21	66.88
Zm00001d004052_P001	Maize	cytosol	68.21	66.45
GSMUA_Achr10P...	Banana	cytosol, plastid	67.55	65.81
GSMUA_Achr10P...	Banana	cytosol	65.56	60.74
CDY07005	Canola	cytosol	59.6	58.82
CDX93266	Canola	mitochondrion	35.1	53.0
GSMUA_Achr8P02690_001	Banana	cytosol	51.66	50.98
GSMUA_Achr2P16120_001	Banana	cytosol	65.56	50.25
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	66.23	48.08

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	GO:A0A078J116	UniProt:A0A078J116	EnsemblPlants:CDY55408
ProteinID:CDY55408	ProteinID:CDY55408.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00016810001
HAMAP:MF_00374	PFAM:PF00831	ScanProsite:PS00579	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35
InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L29_CS	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EEF7BC	SEG:seg

Description

BnaCnng28740DBnaCnng28740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J116]

Coordinates

chrLK033400:-:15757..17130

Molecular Weight (calculated)

17687.0 Da

IEP (calculated)

11.368

GRAVY (calculated)

-0.613

Length

151 amino acids

Sequence
(BLAST)

001: MHEIVRNRFV SYSKEEAAAA SSRWFHCCLA RIKVHELRER SKTDLQNQLQ EFKAELALLR VAKVTGGAPN KLSKIKVVRK SIAQVLTVIS QKQKLALREA
101: YKSKKFLPLD LRPKKTRAIR RRLTKHQASL KTEREKKKDM YFPLRKYAIK V

Best Arabidopsis Sequence Match ( AT2G39390.1 )
(BLAST)

001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV

Arabidopsis Description

RPL35B60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.