Factsheet for HORVU2Hr1G068120.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G278600.1	Wheat	cytosol, unclear	83.22	97.54
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	83.22	97.54
Os04t0376000-01	Rice	cytosol	82.52	95.94
TraesCS2D01G277700.1	Wheat	cytosol	81.82	95.9
PGSC0003DMT400078146	Potato	cytosol	75.52	87.8
VIT_00s0317g00130.t01	Wine grape	cytosol	75.52	87.8
KRH10326	Soybean	endoplasmic reticulum	74.83	86.99
Solyc06g075620.2.1	Tomato	unclear	74.83	86.99
AT3G09500.1	Thale cress	cytosol	74.13	86.18
KRH19753	Soybean	cytosol	74.13	86.18
KRH22989	Soybean	cytosol	74.13	86.18
KRH32348	Soybean	mitochondrion, nucleus	74.13	86.18
PGSC0003DMT400077604	Potato	cytosol	74.13	86.18
AT2G39390.1	Thale cress	cytosol	74.13	86.18
Bra034070.1-P	Field mustard	cytosol	73.43	85.37
Bra029771.1-P	Field mustard	cytosol	73.43	85.37
Solyc05g054810.2.1	Tomato	cytosol	73.43	85.37
Solyc04g010240.2.1	Tomato	nucleus, plastid, unclear	73.43	85.37
PGSC0003DMT400060449	Potato	cytosol	73.43	85.37
Bra001306.1-P	Field mustard	cytosol	73.43	85.37
KRH36218	Soybean	mitochondrion, nucleus	72.73	84.55
KRG92967	Soybean	cytosol	72.73	84.55
Bra028867.1-P	Field mustard	cytosol	72.03	83.74
Bra009577.1-P	Field mustard	cytosol	72.03	83.74
AT3G55170.1	Thale cress	cytosol	72.03	83.74
Zm00001d004349_P001	Maize	cytosol, plastid	58.74	81.55
Zm00001d053550_P001	Maize	cytosol	58.74	81.55
CDY54380	Canola	cytosol	74.13	78.52
CDY41605	Canola	cytosol	73.43	76.64
CDY44711	Canola	cytosol	74.13	76.26
CDY67681	Canola	cytosol	74.13	76.26
GSMUA_Achr4P30580_001	Banana	cytosol	79.02	73.38
AT5G02610.2	Thale cress	cytosol	74.83	73.29
CDY24964	Canola	cytosol	74.13	73.1
GSMUA_Achr10P...	Banana	cytosol, plastid	78.32	72.26
PGSC0003DMT400048945	Potato	cytosol	49.65	71.0
VIT_06s0004g04020.t01	Wine grape	cytosol	73.43	70.95
CDX73982	Canola	mitochondrion	74.83	68.59
CDY55408	Canola	cytosol	70.63	66.89
CDY07930	Canola	extracellular	73.43	66.88
GSMUA_Achr10P...	Banana	cytosol	75.52	66.26
CDY10436	Canola	cytosol	72.03	66.03
CDY07652	Canola	cytosol	73.43	65.62
CDY04860	Canola	extracellular	72.03	60.95
CDY68399	Canola	cytosol	72.73	60.82
GSMUA_Achr2P16120_001	Banana	cytosol	76.92	55.84
GSMUA_Achr8P02690_001	Banana	cytosol	59.44	55.56
CDY07005	Canola	cytosol	58.04	54.25
Solyc01g010960.1.1	Tomato	cytosol	37.06	51.96
Bra000131.1-P	Field mustard	cytosol	74.13	51.96
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.83	51.44
CDX93266	Canola	mitochondrion	33.57	48.0

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	MapMan:17.1.2.1.35	UniProt:A0A287IB06	ncoils:Coil	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:HORVU2Hr1G068120	EnsemblPlants:HORVU2Hr1G068120.2	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872
PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI000B463C36
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:478657505..478659202

Molecular Weight (calculated)

16449.7 Da

IEP (calculated)

11.979

GRAVY (calculated)

-0.766

Length

143 amino acids

Sequence
(BLAST)

001: APHFHLRPPP PPQQISPPTA MARIKVHELR GKNKTELQGQ LKDLKAELSL LRVAKVTGGA PNKLSKIKVV RTSIARVLTV ISQKQKAALR EAYKNKKLLP
101: LDLRPKKTRA IRRRLTKHQL SLKTEREKKR EKYFPMRKYA IKA

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.