CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32348	Soybean	mitochondrion, nucleus	100.0	100.0
KRH19753	Soybean	cytosol	99.19	99.19
KRH10326	Soybean	endoplasmic reticulum	96.75	96.75
KRH36218	Soybean	mitochondrion, nucleus	95.94	95.94
KRG92967	Soybean	cytosol	95.94	95.94
Os04t0376000-01	Rice	cytosol	86.18	86.18
Os02t0503400-01	Rice	nucleus	86.18	86.18
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	85.37	86.07
TraesCS2A01G278600.1	Wheat	cytosol, unclear	85.37	86.07
TraesCS2D01G277700.1	Wheat	cytosol	84.55	85.25
EES05112	Sorghum	cytosol	83.74	83.74
EES05110	Sorghum	cytosol	83.74	83.74
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	82.93	82.93
Zm00001d025160_P001	Maize	cytosol	82.11	82.11
HORVU2Hr1G068120.2	Barley	cytosol	86.18	74.13
Zm00001d004349_P001	Maize	cytosol, plastid	61.79	73.79
Zm00001d053550_P001	Maize	cytosol	61.79	73.79
GSMUA_Achr10P...	Banana	cytosol, plastid	86.99	69.03
GSMUA_Achr4P30580_001	Banana	cytosol	84.55	67.53
Zm00001d004052_P001	Maize	cytosol	83.74	66.45
GSMUA_Achr10P...	Banana	cytosol	86.99	65.64
GSMUA_Achr8P02690_001	Banana	cytosol	69.92	56.21
GSMUA_Achr2P16120_001	Banana	cytosol	86.18	53.81
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	85.37	50.48

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	EntrezGene:100778013	EntrezGene:100789845	MapMan:17.1.2.1.35	EMBL:ACUP02006114
EMBL:ACUP02008450	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G331900	GO:GO:0000463	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	UniProt:I1M4R7	EnsemblPlants:KRH22989	ProteinID:KRH22989	ProteinID:KRH22989.1	ProteinID:KRH32348.1
HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI000233ADF3	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:42648871..42650712

Molecular Weight (calculated)

14321.2 Da

IEP (calculated)

11.509

GRAVY (calculated)

-0.573

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVYELR NKTKAELLNQ LKDLKAELAL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV ISQKQKAALR EAYKKKKYLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK ELYFPLRKYA IKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.