Factsheet for PGSC0003DMT400078146

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075620.2.1	Tomato	unclear	98.37	98.37
PGSC0003DMT400077604	Potato	cytosol	95.94	95.94
PGSC0003DMT400060449	Potato	cytosol	95.12	95.12
VIT_00s0317g00130.t01	Wine grape	cytosol	91.06	91.06
KRH36218	Soybean	mitochondrion, nucleus	90.24	90.24
KRG92967	Soybean	cytosol	90.24	90.24
AT2G39390.1	Thale cress	cytosol	89.43	89.43
AT3G55170.1	Thale cress	cytosol	87.8	87.8
TraesCS2B01G296200.1	Wheat	cytosol, golgi, unclear	86.18	86.89
EES05112	Sorghum	cytosol	86.18	86.18
EES05110	Sorghum	cytosol	86.18	86.18
TraesCS2A01G278600.1	Wheat	cytosol, unclear	85.37	86.07
TraesCS2D01G277700.1	Wheat	cytosol	85.37	86.07
Os04t0376000-01	Rice	cytosol	85.37	85.37
Zm00001d016549_P001	Maize	cytosol, mitochondrion, plasma membrane, plastid	85.37	85.37
Os02t0503400-01	Rice	nucleus	84.55	84.55
Zm00001d025160_P001	Maize	cytosol	84.55	84.55
CDY24964	Canola	cytosol	91.06	77.24
PGSC0003DMT400048945	Potato	cytosol	62.6	77.0
Zm00001d004349_P001	Maize	cytosol, plastid	64.23	76.7
Zm00001d053550_P001	Maize	cytosol	64.23	76.7
HORVU2Hr1G068120.2	Barley	cytosol	87.8	75.52
VIT_06s0004g04020.t01	Wine grape	cytosol	90.24	75.0
GSMUA_Achr4P30580_001	Banana	cytosol	88.62	70.78
CDY07652	Canola	cytosol	90.24	69.38
GSMUA_Achr10P...	Banana	cytosol, plastid	86.18	68.39
Zm00001d004052_P001	Maize	cytosol	84.55	67.1
GSMUA_Achr10P...	Banana	cytosol	84.55	63.8
CDY07005	Canola	cytosol	69.92	56.21
Bra000131.1-P	Field mustard	cytosol	91.06	54.9
GSMUA_Achr8P02690_001	Banana	cytosol	66.67	53.59
GSMUA_Achr2P16120_001	Banana	cytosol	84.55	52.79
CDX93266	Canola	mitochondrion	41.46	51.0
GSMUA_Achr9P03110_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.18	50.96

Protein Annotations

Gene3D:1.10.20.90	Gene3D:1.10.287.310	EntrezGene:102586719	MapMan:17.1.2.1.35	ProteinID:AFW90617	ProteinID:AFW90617.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EMBL:JX576261	UniProt:M1CZG8	HAMAP:MF_00374
PFAM:PF00831	EnsemblPlantsGene:PGSC0003DMG400030395	PGSC:PGSC0003DMG400030395	EnsemblPlants:PGSC0003DMT400078146	PANTHER:PTHR13872	PANTHER:PTHR13872:SF36
InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI000294F782	RefSeq:XP_006350745.1

Description

60S ribosomal protein L35 [Source:PGSC_GENE;Acc:PGSC0003DMG400030395]

Coordinates

chr6:-:56299197..56302118

Molecular Weight (calculated)

14302.2 Da

IEP (calculated)

11.515

GRAVY (calculated)

-0.579

Length

123 amino acids

Sequence
(BLAST)

001: MARIKVHELR NKSKTELLAQ LKDLKAELSL LRVAKVTGGA PNKLSKIKVV RLSIAQVLTV ISQKQKLALR EAYKNKKYLP LDLRPKKTRA IRKRLTKHQA
101: SLKTEREKKK EMYFPLRKYA IKV

Best Arabidopsis Sequence Match ( AT5G02610.1 )
(BLAST)

001: MARIKVHELR DKSKTDLQNQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPVRKYA IKV

Arabidopsis Description

Ribosomal L29 family protein [Source:UniProtKB/TrEMBL;Acc:F4KDR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.