Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY15214 | Canola | nucleus | 60.62 | 53.04 |
CDY11741 | Canola | nucleus | 19.3 | 35.97 |
CDX90132 | Canola | nucleus | 16.6 | 34.96 |
CDY15223 | Canola | nucleus | 27.03 | 33.02 |
CDY15220 | Canola | nucleus | 24.71 | 31.68 |
CDY55326 | Canola | nucleus | 29.34 | 31.41 |
CDY32450 | Canola | nucleus | 27.03 | 31.25 |
CDY32449 | Canola | nucleus | 26.25 | 30.36 |
CDX89994 | Canola | nucleus | 29.34 | 30.28 |
AT1G01010.1 | Thale cress | nucleus | 47.49 | 28.67 |
CDY59815 | Canola | cytosol | 29.34 | 28.46 |
CDX89991 | Canola | nucleus | 28.96 | 27.88 |
CDY55325 | Canola | nucleus | 26.25 | 26.77 |
CDY07138 | Canola | nucleus | 29.34 | 26.39 |
KRH06324 | Soybean | cytosol | 27.03 | 26.22 |
CDY15215 | Canola | nucleus | 42.86 | 26.12 |
CDY15212 | Canola | nucleus | 39.77 | 24.24 |
CDY07135 | Canola | nucleus | 32.82 | 22.91 |
CDX89996 | Canola | nucleus | 22.78 | 22.87 |
CDX89999 | Canola | nucleus | 41.31 | 22.53 |
KRH47750 | Soybean | cytosol | 26.64 | 22.4 |
CDX97252 | Canola | cytosol | 35.52 | 21.55 |
CDX89995 | Canola | nucleus | 28.96 | 21.13 |
CDY07136 | Canola | cytosol | 32.05 | 19.48 |
CDX89990 | Canola | nucleus | 29.73 | 19.44 |
CDY59814 | Canola | cytosol | 31.66 | 19.29 |
CDY15224 | Canola | cytosol | 27.8 | 19.25 |
Os06t0101800-01 | Rice | nucleus | 26.64 | 19.22 |
KRH06327 | Soybean | cytosol | 28.96 | 18.75 |
CDY59812 | Canola | cytosol | 31.66 | 18.18 |
CDY15221 | Canola | cytosol, nucleus, peroxisome | 29.73 | 18.12 |
CDY15218 | Canola | nucleus | 25.48 | 18.08 |
CDY01928 | Canola | cytosol, nucleus, vacuole | 32.82 | 17.49 |
KRH06326 | Soybean | nucleus | 28.57 | 17.17 |
CDY15225 | Canola | nucleus | 26.25 | 17.04 |
KRH47748 | Soybean | cytosol | 26.64 | 17.04 |
CDY15217 | Canola | nucleus | 22.39 | 16.62 |
CDX89993 | Canola | nucleus | 29.73 | 16.49 |
KRH47747 | Soybean | nucleus | 26.25 | 13.68 |
TraesCS7A01G000300.1 | Wheat | nucleus | 25.48 | 12.5 |
TraesCS7D01G000200.1 | Wheat | plastid | 26.64 | 12.3 |
TraesCS4A01G499900.1 | Wheat | plastid | 27.03 | 12.15 |
HORVU7Hr1G000910.1 | Barley | nucleus | 24.71 | 12.08 |
Zm00001d045617_P001 | Maize | nucleus, plasma membrane, vacuole | 25.48 | 10.8 |
EER87676 | Sorghum | plastid | 24.32 | 9.77 |
CDY07137 | Canola | extracellular, plasma membrane | 8.88 | 7.32 |
Protein Annotations
MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078FL90 | UniProt:A0A078FL90 | EnsemblPlants:CDY15210 | ProteinID:CDY15210 |
ProteinID:CDY15210.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00085398001 | InterPro:IPR003441 |
InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
PANTHER:PTHR31989:SF57 | SUPFAM:SSF101941 | UniParc:UPI0004EDF65A | SEG:seg | : | : |
Description
BnaC05g00890DBnaC05g00890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL90]
Coordinates
chrLK032052:-:464710..465901
Molecular Weight (calculated)
29685.4 Da
IEP (calculated)
6.129
GRAVY (calculated)
-0.482
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGIVGFGFR PTDEELVGYY LHNKILGRNW LVQEFISEVN ISDFDPWNLR SSLSVSLSVS LSVQSKVKSR DLVWYFFSRR DANGDRQNRR TSSGFWKITG
101: DPVDVKDQWG TWCGFAGKIG YKKVLVFRMG RSSSSQSPKS DWVIHEYHYT LVPENQRTYV ICRLEYKGHD MSILSSNTTD PVPTFVPNAA NSTASGSVVS
201: QSVQGNLGSF NTFFDYDSAN QGQWFNGDFN LEQPVVPYDD GTYRIWDYVV EENFSRYRL
101: DPVDVKDQWG TWCGFAGKIG YKKVLVFRMG RSSSSQSPKS DWVIHEYHYT LVPENQRTYV ICRLEYKGHD MSILSSNTTD PVPTFVPNAA NSTASGSVVS
201: QSVQGNLGSF NTFFDYDSAN QGQWFNGDFN LEQPVVPYDD GTYRIWDYVV EENFSRYRL
001: MEDQVGFGFR PNDEELVGHY LRNKIEGNTS RDVEVAISEV NICSYDPWNL RFQSKYKSRD AMWYFFSRRE NNKGNRQSRT TVSGKWKLTG ESVEVKDQWG
101: FCSEGFRGKI GHKRVLVFLD GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS SAGSVVNQSR QRNSGSYNTY
201: SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS
301: GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL
401: ENAQWNYLKN MIIGVLLFIS VISWIILVG
101: FCSEGFRGKI GHKRVLVFLD GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS SAGSVVNQSR QRNSGSYNTY
201: SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS
301: GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL
401: ENAQWNYLKN MIIGVLLFIS VISWIILVG
Arabidopsis Description
NAC001NAC domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.