Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14730.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G14730.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G14730.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G14730.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036891.1-P | Field mustard | plasma membrane | 97.91 | 97.91 |
| CDY29762 | Canola | plasma membrane | 97.91 | 97.91 |
| AT4G14730.1 | Thale cress | plasma membrane | 73.22 | 74.47 |
| CDY53716 | Canola | plasma membrane | 55.23 | 55.23 |
| CDX93913 | Canola | plasma membrane | 54.81 | 54.81 |
| VIT_05s0020g04030.t01 | Wine grape | plasma membrane | 50.21 | 54.3 |
| GSMUA_Achr9P10630_001 | Banana | plasma membrane | 52.72 | 51.85 |
| CDX89914 | Canola | plasma membrane | 52.72 | 51.43 |
| CDY18147 | Canola | plasma membrane | 52.72 | 50.81 |
| KRH35929 | Soybean | plasma membrane | 51.05 | 50.62 |
| CDX91308 | Canola | plasma membrane | 52.3 | 50.4 |
| CDX97282 | Canola | plasma membrane | 52.3 | 50.4 |
| KRG90848 | Soybean | plasma membrane | 49.37 | 48.76 |
| Os07t0177200-01 | Rice | mitochondrion | 45.19 | 48.43 |
| EER90743 | Sorghum | plasma membrane | 48.95 | 47.37 |
| GSMUA_Achr8P20490_001 | Banana | peroxisome, plasma membrane, vacuole | 48.12 | 47.13 |
| Os03t0795600-01 | Rice | plasma membrane | 48.54 | 46.96 |
| Zm00001d034431_P001 | Maize | plasma membrane | 46.44 | 44.58 |
| Os11t0581900-01 | Rice | plasma membrane | 48.12 | 44.57 |
| TraesCS5D01G444900.1 | Wheat | plasma membrane | 45.19 | 44.08 |
| TraesCS5A01G437700.1 | Wheat | plasma membrane | 44.77 | 44.03 |
| CDY28900 | Canola | extracellular | 12.13 | 43.94 |
| TraesCS5B01G440500.1 | Wheat | plasma membrane | 45.19 | 43.9 |
| CDY09066 | Canola | golgi, peroxisome, plasma membrane | 46.44 | 43.36 |
| CDX90589 | Canola | golgi, peroxisome, plasma membrane | 46.03 | 43.14 |
| CDY09761 | Canola | golgi, peroxisome, plasma membrane | 46.03 | 42.97 |
| EES10004 | Sorghum | peroxisome | 46.86 | 41.33 |
| CDY22739 | Canola | plasma membrane | 46.86 | 41.18 |
| PGSC0003DMT400016496 | Potato | cytosol, golgi, peroxisome | 41.42 | 40.91 |
| Solyc09g082590.2.1 | Tomato | cytosol, golgi, peroxisome | 39.75 | 39.26 |
| Zm00001d052964_P002 | Maize | plasma membrane | 43.51 | 36.49 |
| CDX98559 | Canola | mitochondrion, plasma membrane | 18.83 | 30.41 |
| CDY49039 | Canola | plastid | 20.08 | 26.09 |
| CDY09067 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY16255 | EnsemblPlantsGene:GSBRNA2T00090722001 | GO:A0A078FP74 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Bax_inhibitor_1-related | PANTHER:PTHR23291 | PANTHER:PTHR23291:SF31 | PFAM:PF01027 | ProteinID:CDY16255 | ProteinID:CDY16255.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EC101C | UniProt:A0A078FP74 | MapMan:35.1 | : |
Description
BnaC01g22900DBnaC01g22900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP74]
Coordinates
chrLK032062:+:4208..6654
Molecular Weight (calculated)
26528.4 Da
IEP (calculated)
8.205
GRAVY (calculated)
1.043
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSDIESGV VIGGKELYPK MTESPELRWA FTRKVYAILT LQLIVTVGVS SVVFFVGEIS VFITTTTSGL VVFFVSLLLP LLMLWPLIVF AKKHPVNLII
101: LMLFTLSISF AVGLCCSFSK GKIVLEAAVL TATMVVGLTI YTFWAVRRGH DFSFLAPFLF GSLLTILVFA TIQVFHPLGK LSSMIFSCVA SVCFCGYIIY
201: DTNQLIKKLN YDEYIHAAIS LYLDVINLFL NLVGILVHT
101: LMLFTLSISF AVGLCCSFSK GKIVLEAAVL TATMVVGLTI YTFWAVRRGH DFSFLAPFLF GSLLTILVFA TIQVFHPLGK LSSMIFSCVA SVCFCGYIIY
201: DTNQLIKKLN YDEYIHAAIS LYLDVINLFL NLVGILVHT
001: MAKSDIETGG GNELYPGMKE SSELRWAFIR KLYSILSLQL LVTVGVSAVV YFVRPIPEFI TETHRGLAVF FVILLLPLLL LWPLLAFEKK HPINCIVLSI
101: FTLSISFSVG ICCSLSQGRI VLEAAILTAV MVFGLTIYTF WAVKRGHDFS FLGPFLFGAL LIILVFTLLQ IFHPLGKLSS MIFSGIASIV FCGYIIFDTN
201: QLIKKLNYDE YITAAIRLYL DVMNLFLSLL GIISN
101: FTLSISFSVG ICCSLSQGRI VLEAAILTAV MVFGLTIYTF WAVKRGHDFS FLGPFLFGAL LIILVFTLLQ IFHPLGKLSS MIFSGIASIV FCGYIIFDTN
201: QLIKKLNYDE YITAAIRLYL DVMNLFLSLL GIISN
Arabidopsis Description
LFG1Protein LIFEGUARD 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JIE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.