CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
peroxisome 1
golgi 2
extracellular 1
plasma membrane 3
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14730.1	KRH11076	AT4G19030.1	21798944
AT4G14730.1	KRH21197	AT4G19030.1	21798944
AT4G14730.1	KRH42923	AT4G19030.1	21798944
AT4G14730.1	KRH42926	AT4G19030.1	21798944
AT4G14730.1	KRH45251	AT4G19030.1	21798944
AT4G14730.1	KRH59035	AT4G19030.1	21798944
AT4G14730.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90848	Soybean	plasma membrane	92.12	91.74
VIT_05s0020g04030.t01	Wine grape	plasma membrane	48.96	53.39
CDY16255	Canola	plasma membrane	50.62	51.05
Bra036891.1-P	Field mustard	plasma membrane	50.21	50.63
CDY29762	Canola	plasma membrane	50.21	50.63
AT4G14730.1	Thale cress	plasma membrane	48.55	49.79
GSMUA_Achr9P10630_001	Banana	plasma membrane	48.13	47.74
EER90743	Sorghum	plasma membrane	48.55	47.37
KRH32057	Soybean	plasma membrane	46.47	46.28
KRH67263	Soybean	extracellular	12.45	45.45
KRG95577	Soybean	plasma membrane	45.64	45.27
Os03t0795600-01	Rice	plasma membrane	46.06	44.94
GSMUA_Achr8P20490_001	Banana	peroxisome, plasma membrane, vacuole	45.23	44.67
TraesCS5D01G444900.1	Wheat	plasma membrane	44.81	44.08
TraesCS5B01G440500.1	Wheat	plasma membrane	44.81	43.9
Zm00001d034431_P001	Maize	plasma membrane	45.23	43.78
TraesCS5A01G437700.1	Wheat	plasma membrane	43.98	43.62
Os07t0177200-01	Rice	mitochondrion	40.25	43.5
KRH11337	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	43.57	42.68
KRH20943	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	43.15	42.28
PGSC0003DMT400016496	Potato	cytosol, golgi, peroxisome	41.49	41.32
Solyc09g082590.2.1	Tomato	cytosol, golgi, peroxisome	40.66	40.5
KRH71378	Soybean	mitochondrion	46.89	39.93
Os11t0581900-01	Rice	plasma membrane	42.74	39.92
EES10004	Sorghum	peroxisome	41.08	36.53
Zm00001d052964_P002	Maize	plasma membrane	39.42	33.33

Protein Annotations

EMBL:ACUP02006711	EnsemblPlants:KRH35929	EnsemblPlantsGene:GLYMA_10G272600	EntrezGene:100780222	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Bax_inhibitor_1-related	PANTHER:PTHR23291	PANTHER:PTHR23291:SF31	PFAM:PF01027	ProteinID:KRH35929
ProteinID:KRH35929.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233CF39	UniProt:I1LEV2	MapMan:35.1

Description

hypothetical protein

Coordinates

chr10:-:49518949..49521028

Molecular Weight (calculated)

27420.2 Da

IEP (calculated)

8.272

GRAVY (calculated)

0.910

Length

241 amino acids

Sequence
(BLAST)

001: MGKHDIEAGL PHAQGDALYP YMIESPQLRW GFIRKVYAII SLQLLFTAAF ASFFIFFTPA RNFARYNQYR IWVFFGAAIF SIILLFVLSK FYKKHPVNLF
101: LLGLYTLCMS VTVGFACSFV DAKIVLEAAF LTGVVTASLT IYTFWAVKRG SDFSFLGPFL FASIMVMLLF ALIQVFYPLG PIGRMMIACI GAIVMCGFIV
201: YDTDDLIKRY TYDDYIWAAI SIYGDVISLF IYLLTILNEL F

Best Arabidopsis Sequence Match ( AT4G14730.1 )
(BLAST)

001: MAKSDIETGG GNELYPGMKE SSELRWAFIR KLYSILSLQL LVTVGVSAVV YFVRPIPEFI TETHRGLAVF FVILLLPLLL LWPLLAFEKK HPINCIVLSI
101: FTLSISFSVG ICCSLSQGRI VLEAAILTAV MVFGLTIYTF WAVKRGHDFS FLGPFLFGAL LIILVFTLLQ IFHPLGKLSS MIFSGIASIV FCGYIIFDTN
201: QLIKKLNYDE YITAAIRLYL DVMNLFLSLL GIISN

Arabidopsis Description

LFG1Protein LIFEGUARD 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JIE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.