Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14730.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT4G14730.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT4G14730.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT4G14730.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036891.1-P | Field mustard | plasma membrane | 99.16 | 99.16 |
| CDY16255 | Canola | plasma membrane | 97.91 | 97.91 |
| AT4G14730.1 | Thale cress | plasma membrane | 74.48 | 75.74 |
| CDY53716 | Canola | plasma membrane | 54.81 | 54.81 |
| CDX93913 | Canola | plasma membrane | 54.39 | 54.39 |
| VIT_05s0020g04030.t01 | Wine grape | plasma membrane | 49.79 | 53.85 |
| GSMUA_Achr9P10630_001 | Banana | plasma membrane | 52.3 | 51.44 |
| CDX89914 | Canola | plasma membrane | 52.3 | 51.02 |
| CDY18147 | Canola | plasma membrane | 52.3 | 50.4 |
| KRH35929 | Soybean | plasma membrane | 50.63 | 50.21 |
| CDX91308 | Canola | plasma membrane | 51.88 | 50.0 |
| CDX97282 | Canola | plasma membrane | 51.88 | 50.0 |
| KRG90848 | Soybean | plasma membrane | 49.37 | 48.76 |
| Os07t0177200-01 | Rice | mitochondrion | 45.19 | 48.43 |
| EER90743 | Sorghum | plasma membrane | 49.37 | 47.77 |
| Os03t0795600-01 | Rice | plasma membrane | 48.95 | 47.37 |
| GSMUA_Achr8P20490_001 | Banana | peroxisome, plasma membrane, vacuole | 48.12 | 47.13 |
| Zm00001d034431_P001 | Maize | plasma membrane | 46.86 | 44.98 |
| CDY09066 | Canola | golgi, peroxisome, plasma membrane | 47.7 | 44.53 |
| TraesCS5D01G444900.1 | Wheat | plasma membrane | 45.61 | 44.49 |
| TraesCS5A01G437700.1 | Wheat | plasma membrane | 45.19 | 44.44 |
| CDX90589 | Canola | golgi, peroxisome, plasma membrane | 47.28 | 44.31 |
| TraesCS5B01G440500.1 | Wheat | plasma membrane | 45.61 | 44.31 |
| CDY09761 | Canola | golgi, peroxisome, plasma membrane | 47.28 | 44.14 |
| CDY28900 | Canola | extracellular | 12.13 | 43.94 |
| Os11t0581900-01 | Rice | plasma membrane | 47.28 | 43.8 |
| CDY22739 | Canola | plasma membrane | 48.12 | 42.28 |
| EES10004 | Sorghum | peroxisome | 46.44 | 40.96 |
| PGSC0003DMT400016496 | Potato | cytosol, golgi, peroxisome | 41.42 | 40.91 |
| Solyc09g082590.2.1 | Tomato | cytosol, golgi, peroxisome | 39.75 | 39.26 |
| Zm00001d052964_P002 | Maize | plasma membrane | 43.1 | 36.14 |
| CDX98559 | Canola | mitochondrion, plasma membrane | 18.41 | 29.73 |
| CDY49039 | Canola | plastid | 19.67 | 25.54 |
| CDY09067 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY29762 | EnsemblPlantsGene:GSBRNA2T00043617001 | GO:D2CVS1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Bax_inhibitor_1-related | PANTHER:PTHR23291 | PANTHER:PTHR23291:SF31 | PFAM:PF01027 | ProteinID:CDY29762 | ProteinID:CDY29762.1 |
| SEG:seg | TMHMM:TMhelix | unigene:Bna.5467 | UniParc:UPI0001C06A69 | UniProt:D2CVS1 | MapMan:35.1 |
Description
BnaA01g19040DBnaA01g19040D protein [Source:UniProtKB/TrEMBL;Acc:D2CVS1]
Coordinates
chrLK032243:+:311018..312525
Molecular Weight (calculated)
26594.6 Da
IEP (calculated)
8.206
GRAVY (calculated)
1.085
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSDIESGV VIGGKELYPK MTESTELRWA FIRKVYAILT LQLIVTVGVS SVVFFVGEIS VFITTTTPGL VVFFVSLLLP LLMLWPLIVF AKKHPVNLII
101: LMLFTLSISF AVGLCCSFSK GRIVLEAAVL TATMVVGLTI YTFWAVRRGH DFSFLAPFLF GSLLIILVFA TIQVFHPLGK LSSMIFSCVA SVCFCGYIIY
201: DTNQLIKKLN YDEYIHAAIS LYLDVINLFL NLVGILVHT
101: LMLFTLSISF AVGLCCSFSK GRIVLEAAVL TATMVVGLTI YTFWAVRRGH DFSFLAPFLF GSLLIILVFA TIQVFHPLGK LSSMIFSCVA SVCFCGYIIY
201: DTNQLIKKLN YDEYIHAAIS LYLDVINLFL NLVGILVHT
001: MAKSDIETGG GNELYPGMKE SSELRWAFIR KLYSILSLQL LVTVGVSAVV YFVRPIPEFI TETHRGLAVF FVILLLPLLL LWPLLAFEKK HPINCIVLSI
101: FTLSISFSVG ICCSLSQGRI VLEAAILTAV MVFGLTIYTF WAVKRGHDFS FLGPFLFGAL LIILVFTLLQ IFHPLGKLSS MIFSGIASIV FCGYIIFDTN
201: QLIKKLNYDE YITAAIRLYL DVMNLFLSLL GIISN
101: FTLSISFSVG ICCSLSQGRI VLEAAILTAV MVFGLTIYTF WAVKRGHDFS FLGPFLFGAL LIILVFTLLQ IFHPLGKLSS MIFSGIASIV FCGYIIFDTN
201: QLIKKLNYDE YITAAIRLYL DVMNLFLSLL GIISN
Arabidopsis Description
LFG1Protein LIFEGUARD 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JIE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.