CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28900	Canola	extracellular	34.46	77.27
CDY49039	Canola	plastid	68.92	55.43
CDX91308	Canola	plasma membrane	44.59	26.61
CDX97282	Canola	plasma membrane	44.59	26.61
CDX89914	Canola	plasma membrane	40.54	24.49
CDY53716	Canola	plasma membrane	38.51	23.85
CDY18147	Canola	plasma membrane	39.86	23.79
PGSC0003DMT400049703	Potato	plasma membrane	38.51	23.55
CDX93913	Canola	plasma membrane	37.84	23.43
KRH32057	Soybean	plasma membrane	37.16	22.73
GSMUA_Achr9P10630_001	Banana	plasma membrane	33.11	20.16
KRH71378	Soybean	mitochondrion	37.16	19.43
CDY16255	Canola	plasma membrane	30.41	18.83
CDY29762	Canola	plasma membrane	29.73	18.41
CDX90589	Canola	golgi, peroxisome, plasma membrane	29.73	17.25
GSMUA_Achr8P20490_001	Banana	peroxisome, plasma membrane, vacuole	28.38	17.21
CDY09761	Canola	golgi, peroxisome, plasma membrane	29.73	17.19
CDY09066	Canola	golgi, peroxisome, plasma membrane	29.73	17.19
Os03t0795600-01	Rice	plasma membrane	27.03	16.19
EER90743	Sorghum	plasma membrane	27.03	16.19
CDY22739	Canola	plasma membrane	29.73	16.18
Zm00001d034431_P001	Maize	plasma membrane	27.03	16.06
Os07t0177200-01	Rice	mitochondrion	23.65	15.7
Os11t0581900-01	Rice	plasma membrane	26.35	15.12
TraesCS5D01G444900.1	Wheat	plasma membrane	25.0	15.1
TraesCS5B01G440500.1	Wheat	plasma membrane	25.0	15.04
TraesCS5A01G437700.1	Wheat	plasma membrane	24.32	14.81
EES10004	Sorghum	peroxisome	26.35	14.39
Zm00001d052964_P002	Maize	plasma membrane	25.68	13.33
CDY09067	Canola	plastid	0.0	0.0
Solyc09g065610.1.1	Tomato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDX98559	EnsemblPlantsGene:GSBRNA2T00106216001	Gene3D:3.30.200.20	GO:A0A078ECS5	InterPro:Bax_inhibitor_1-related	PANTHER:PTHR23291
PANTHER:PTHR23291:SF31	PFAM:PF01027	ProteinID:CDX98559	ProteinID:CDX98559.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EEA7FB	MapMan:35.2	:	:	:	:

Description

BnaC05g38160D

Coordinates

chrLK031905:-:1006675..1007921

Molecular Weight (calculated)

16668.9 Da

IEP (calculated)

6.797

GRAVY (calculated)

0.520

Length

148 amino acids

Sequence
(BLAST)

001: MARMGGRLMA RLSGCFSVII VETIAKKKVE DVTPIATGHE KEELEAELEN KEQLELVREE IRVWSLFNHT NLLPLLDHAI ISVKVRKVIL ESAILTTVVV
101: LSLTVYTFWA AKRGYDFNFL GPFLFGALIV LIVFAMIQVM PLIPNSMP

Best Arabidopsis Sequence Match ( AT1G03070.1 )
(BLAST)

001: MYKWNLPYRK DDVETGREGG ERSLYPTMLE SPELRWGFIR KVYSIIAFQL LATIAVASTV VFVRPIAVFF ATTSAGLALW IVLIITPLIV MCPLYYYHQK
101: HPVNYLLLGI FTVALAFAVG LTCAFTSGKV ILEAAILTTV VVLSLTVYTF WAAKKGYDFN FLGPFLFGAL IVLMVFALIQ IFFPLGRISV MIYGCLAAII
201: FCGYIVYDTD NLIKRYSYDE YIWAAVSLYL DIINLFLALL TIFRAAE

Arabidopsis Description

LFG4Protein LIFEGUARD 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA63]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.