CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
golgi 2
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	golgi
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038082.1-P	Field mustard	golgi, peroxisome, plasma membrane	98.83	99.61
CDX90589	Canola	golgi, peroxisome, plasma membrane	97.27	97.65
CDY09761	Canola	golgi, peroxisome, plasma membrane	96.48	96.48
AT4G15470.1	Thale cress	plasma membrane	94.53	94.53
CDY22739	Canola	plasma membrane	97.66	91.91
Solyc01g080330.2.1	Tomato	plasma membrane	70.7	73.58
PGSC0003DMT400033268	Potato	plasma membrane	70.7	73.58
VIT_05s0020g02430.t01	Wine grape	golgi, peroxisome, plasma membrane	69.14	73.44
KRH20943	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	66.02	68.7
KRH11337	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	65.62	68.29
GSMUA_Achr8P21800_001	Banana	peroxisome, plasma membrane, vacuole	62.11	64.63
GSMUA_Achr10P...	Banana	peroxisome	61.33	63.82
GSMUA_Achr5P27390_001	Banana	plasma membrane	60.94	62.9
HORVU1Hr1G061500.2	Barley	peroxisome	63.28	61.83
TraesCS1D01G251100.1	Wheat	golgi	62.89	61.45
TraesCS1A01G251600.1	Wheat	peroxisome	62.89	61.45
TraesCS1B01G262200.1	Wheat	peroxisome	62.5	61.07
PGSC0003DMT400035266	Potato	peroxisome	57.42	60.74
Solyc07g042510.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.64	59.67
Zm00001d038147_P001	Maize	plasma membrane	61.33	59.47
Os05t0402300-02	Rice	plasma membrane	60.94	59.09
KXG21947	Sorghum	plasma membrane	60.55	58.71
CDY53716	Canola	plasma membrane	50.78	54.39
CDX97282	Canola	plasma membrane	51.95	53.63
CDX91308	Canola	plasma membrane	51.95	53.63
CDX93913	Canola	plasma membrane	50.0	53.56
CDX89914	Canola	plasma membrane	50.39	52.65
CDY18147	Canola	plasma membrane	50.0	51.61
CDY28900	Canola	extracellular	12.89	50.0
CDY29762	Canola	plasma membrane	44.53	47.7
CDY16255	Canola	plasma membrane	43.36	46.44
CDX98559	Canola	mitochondrion, plasma membrane	17.19	29.73
CDY49039	Canola	plastid	19.92	27.72
CDY09067	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY09066	EnsemblPlantsGene:GSBRNA2T00001239001	GO:A0A078F6Q4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Bax_inhibitor_1-related	PANTHER:PTHR23291	PANTHER:PTHR23291:SF31	PFAM:PF01027	ProteinID:CDY09066	ProteinID:CDY09066.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDECE6	UniProt:A0A078F6Q4	MapMan:35.1	:

Description

BnaC08g10200DBnaC08g10200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6Q4]

Coordinates

chrLK031992:+:405134..406504

Molecular Weight (calculated)

28231.1 Da

IEP (calculated)

6.248

GRAVY (calculated)

0.757

Length

256 amino acids

Sequence
(BLAST)

001: MEKPYGYASV SMSMSGVDRS AGKDIDLEMG EATLYPGLSY GENQLRWGFI RKVYGILSAQ LLLTTLISAV VVLNPPVNEL LTGSPGLLLF LCIIPFVLIW
101: PLHVYHQKHP VNLILLALFT ISLSFTVGVS CAMTEGRIVL EALILTLSVV GSLTAYTFWA AKKGKDFSFL GPILFTSLII LVVTSFMQMF FPLGPTSVAI
201: YGGVSALVFC GYIVYDTDNL IKRFTYDEYI LASVALYLDI LNLFLTILRI LRQGDN

Best Arabidopsis Sequence Match ( AT4G15470.1 )
(BLAST)

001: MDKPYGYASV SMSGIDRSAG KDIDLEMGVG EATLYPGLSY GENQLRWGFI RKVYGILSAQ LLLTTLISAV VVLNPPVNDL LTGSPGILLF LCIVPFILIW
101: PLHIYHQKHP VNLILLALFT VSLSFTVGVS CAMTEGRIVL QALILTLSVV GSLTAYTFWA AKKGKDFSFL GPILFTSLII LVVTSFIQMF FPLGPTSVAV
201: YGGFSALVFC GYIVYDTDNL IKRFTYDEYI LASVALYLDI LNLFLTILRI LRQGDN

Arabidopsis Description

LFG5BI1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q94A20]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.