Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038082.1-P | Field mustard | golgi, peroxisome, plasma membrane | 94.92 | 95.67 |
| CDX90589 | Canola | golgi, peroxisome, plasma membrane | 94.53 | 94.9 |
| CDY09066 | Canola | golgi, peroxisome, plasma membrane | 94.53 | 94.53 |
| Bra012786.1-P | Field mustard | plasma membrane | 93.75 | 93.75 |
| CDY09761 | Canola | golgi, peroxisome, plasma membrane | 93.36 | 93.36 |
| CDY22739 | Canola | plasma membrane | 93.75 | 88.24 |
| VIT_05s0020g02430.t01 | Wine grape | golgi, peroxisome, plasma membrane | 69.53 | 73.86 |
| Solyc01g080330.2.1 | Tomato | plasma membrane | 70.31 | 73.17 |
| PGSC0003DMT400033268 | Potato | plasma membrane | 70.31 | 73.17 |
| KRH20943 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 65.62 | 68.29 |
| KRH11337 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 65.23 | 67.89 |
| GSMUA_Achr8P21800_001 | Banana | peroxisome, plasma membrane, vacuole | 61.72 | 64.23 |
| GSMUA_Achr10P... | Banana | peroxisome | 60.94 | 63.41 |
| HORVU1Hr1G061500.2 | Barley | peroxisome | 64.84 | 63.36 |
| TraesCS1A01G251600.1 | Wheat | peroxisome | 64.45 | 62.98 |
| TraesCS1D01G251100.1 | Wheat | golgi | 64.45 | 62.98 |
| TraesCS1B01G262200.1 | Wheat | peroxisome | 64.06 | 62.6 |
| GSMUA_Achr5P27390_001 | Banana | plasma membrane | 60.55 | 62.5 |
| PGSC0003DMT400035266 | Potato | peroxisome | 57.42 | 60.74 |
| Zm00001d038147_P001 | Maize | plasma membrane | 60.94 | 59.09 |
| Solyc07g042510.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 55.47 | 58.44 |
| Os05t0402300-02 | Rice | plasma membrane | 60.16 | 58.33 |
| KXG21947 | Sorghum | plasma membrane | 60.16 | 58.33 |
| AT3G63310.1 | Thale cress | plasma membrane | 49.22 | 52.72 |
| AT1G03070.3 | Thale cress | plasma membrane | 50.39 | 52.23 |
| AT4G02690.1 | Thale cress | plasma membrane | 48.05 | 49.6 |
| AT4G14730.1 | Thale cress | plasma membrane | 44.53 | 48.51 |
| CDY09067 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827218 | UniProt:A0A178UX06 | ProteinID:AEE83607.1 | ArrayExpress:AT4G15470 | EnsemblPlantsGene:AT4G15470 |
| RefSeq:AT4G15470 | TAIR:AT4G15470 | RefSeq:AT4G15470-TAIR-G | EnsemblPlants:AT4G15470.1 | TAIR:AT4G15470.1 | EMBL:AY050443 |
| EMBL:AY056115 | EMBL:AY097356 | Unigene:At.20495 | InterPro:Bax_inhibitor_1-related | ProteinID:CAB10325.1 | ProteinID:CAB78589.1 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_567466.1 | ProteinID:OAO98546.1 | PFAM:PF01027 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR23291 | PANTHER:PTHR23291:SF31 |
| UniProt:Q94A20 | TMHMM:TMhelix | UniParc:UPI00000A53D1 | SEG:seg | : | : |
Description
LFG5BI1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q94A20]
Coordinates
chr4:+:8843519..8845810
Molecular Weight (calculated)
28170.0 Da
IEP (calculated)
6.769
GRAVY (calculated)
0.775
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKPYGYASV SMSGIDRSAG KDIDLEMGVG EATLYPGLSY GENQLRWGFI RKVYGILSAQ LLLTTLISAV VVLNPPVNDL LTGSPGILLF LCIVPFILIW
101: PLHIYHQKHP VNLILLALFT VSLSFTVGVS CAMTEGRIVL QALILTLSVV GSLTAYTFWA AKKGKDFSFL GPILFTSLII LVVTSFIQMF FPLGPTSVAV
201: YGGFSALVFC GYIVYDTDNL IKRFTYDEYI LASVALYLDI LNLFLTILRI LRQGDN
101: PLHIYHQKHP VNLILLALFT VSLSFTVGVS CAMTEGRIVL QALILTLSVV GSLTAYTFWA AKKGKDFSFL GPILFTSLII LVVTSFIQMF FPLGPTSVAV
201: YGGFSALVFC GYIVYDTDNL IKRFTYDEYI LASVALYLDI LNLFLTILRI LRQGDN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.