Factsheet for Bra012786.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90589	Canola	golgi, peroxisome, plasma membrane	98.83	99.22
Bra038082.1-P	Field mustard	golgi, peroxisome, plasma membrane	97.27	98.03
CDY09761	Canola	golgi, peroxisome, plasma membrane	97.66	97.66
AT4G15470.1	Thale cress	plasma membrane	93.75	93.75
PGSC0003DMT400033268	Potato	plasma membrane	70.7	73.58
Solyc01g080330.2.1	Tomato	plasma membrane	70.7	73.58
VIT_05s0020g02430.t01	Wine grape	golgi, peroxisome, plasma membrane	68.75	73.03
KRH20943	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	66.41	69.11
KRH11337	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	66.02	68.7
GSMUA_Achr8P21800_001	Banana	peroxisome, plasma membrane, vacuole	62.11	64.63
GSMUA_Achr10P...	Banana	peroxisome	61.33	63.82
GSMUA_Achr5P27390_001	Banana	plasma membrane	60.94	62.9
HORVU1Hr1G061500.2	Barley	peroxisome	63.28	61.83
TraesCS1A01G251600.1	Wheat	peroxisome	62.89	61.45
TraesCS1D01G251100.1	Wheat	golgi	62.89	61.45
PGSC0003DMT400035266	Potato	peroxisome	57.81	61.16
TraesCS1B01G262200.1	Wheat	peroxisome	62.5	61.07
Zm00001d038147_P001	Maize	plasma membrane	61.33	59.47
Solyc07g042510.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.25	59.26
Os05t0402300-02	Rice	plasma membrane	60.94	59.09
KXG21947	Sorghum	plasma membrane	60.55	58.71
Bra018534.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	48.83	56.56
Bra040445.1-P	Field mustard	plasma membrane	50.39	53.97
Bra033373.1-P	Field mustard	plasma membrane	50.78	53.06
Bra036891.1-P	Field mustard	plasma membrane	42.97	46.03
Bra031411.1-P	Field mustard	plastid	20.7	28.34

Protein Annotations

EnsemblPlants:Bra012786.1	EnsemblPlants:Bra012786.1-P	EnsemblPlantsGene:Bra012786	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Bax_inhibitor_1-related	PANTHER:PTHR23291	PANTHER:PTHR23291:SF31	PFAM:PF01027	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025407D7	UniProt:M4D8H6	MapMan:35.1	:	:	:

Description

AT4G15470 (E=3e-130) | EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT1G03070.1); Has 4000 Blast hits to 3999 proteins in 955 species: Archae - 0; Bacteria - 1775; Metazoa - 750; Fungi - 92; Plants - 143; Viruses - 77; Other Eukaryotes - 1163 (source: NCBI BLink).

Coordinates

chrA03:+:22277933..22279196

Molecular Weight (calculated)

28151.9 Da

IEP (calculated)

6.246

GRAVY (calculated)

0.738

Length

256 amino acids

Sequence
(BLAST)

001: MENPYGYASV SRSGVDRAAG KDIDLEMGTG EATLYPGLSY GENQLRWGFI RKVYGILSAQ LLLTTLISAV VVLNPPVNDV LTGSPGLLLF LCIIPFVLIW
101: PLHVYHQKHP VNLILLALFT ISLSFTVGVS CAMTEGRIVL EALILTLSVV GSLTAYTFWA AKKGKDFSFL GPILFTSLII LVVTSFMQMF FPLGPTSVAI
201: YGGISALVFC GYIVYDTDNL IKRFTYDEYI LASVALYLDI LNLFLTILRI LRQGDN

Best Arabidopsis Sequence Match ( AT4G15470.1 )
(BLAST)

001: MDKPYGYASV SMSGIDRSAG KDIDLEMGVG EATLYPGLSY GENQLRWGFI RKVYGILSAQ LLLTTLISAV VVLNPPVNDL LTGSPGILLF LCIVPFILIW
101: PLHIYHQKHP VNLILLALFT VSLSFTVGVS CAMTEGRIVL QALILTLSVV GSLTAYTFWA AKKGKDFSFL GPILFTSLII LVVTSFIQMF FPLGPTSVAV
201: YGGFSALVFC GYIVYDTDNL IKRFTYDEYI LASVALYLDI LNLFLTILRI LRQGDN

Arabidopsis Description

LFG5BI1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q94A20]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.