Subcellular Localization
min:
: max
Winner_takes_all: cytosol, golgi, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- extracellular 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14730.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT4G14730.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016496 | Potato | cytosol, golgi, peroxisome | 94.63 | 94.63 |
| Solyc09g065610.1.1 | Tomato | extracellular | 12.4 | 51.72 |
| GSMUA_Achr9P10630_001 | Banana | plasma membrane | 44.63 | 44.44 |
| TraesCS5A01G437700.1 | Wheat | plasma membrane | 44.21 | 44.03 |
| Os07t0177200-01 | Rice | mitochondrion | 40.08 | 43.5 |
| Os03t0795600-01 | Rice | plasma membrane | 44.21 | 43.32 |
| TraesCS5B01G440500.1 | Wheat | plasma membrane | 43.8 | 43.09 |
| TraesCS5D01G444900.1 | Wheat | plasma membrane | 43.39 | 42.86 |
| GSMUA_Achr8P20490_001 | Banana | peroxisome, plasma membrane, vacuole | 42.98 | 42.62 |
| KRG90848 | Soybean | plasma membrane | 42.56 | 42.56 |
| Solyc06g084130.2.1 | Tomato | plasma membrane | 44.21 | 42.46 |
| EER90743 | Sorghum | plasma membrane | 42.98 | 42.11 |
| Zm00001d034431_P001 | Maize | plasma membrane | 42.98 | 41.77 |
| AT4G14730.1 | Thale cress | plasma membrane | 40.5 | 41.7 |
| KRH35929 | Soybean | plasma membrane | 40.5 | 40.66 |
| VIT_05s0020g04030.t01 | Wine grape | plasma membrane | 36.78 | 40.27 |
| CDY29762 | Canola | plasma membrane | 39.26 | 39.75 |
| CDY16255 | Canola | plasma membrane | 39.26 | 39.75 |
| Bra036891.1-P | Field mustard | plasma membrane | 38.84 | 39.33 |
| Solyc07g042510.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 38.02 | 37.86 |
| Os11t0581900-01 | Rice | plasma membrane | 39.67 | 37.21 |
| Solyc01g080330.2.1 | Tomato | plasma membrane | 37.6 | 36.99 |
| EES10004 | Sorghum | peroxisome | 36.78 | 32.84 |
| Zm00001d052964_P002 | Maize | plasma membrane | 35.95 | 30.53 |
Protein Annotations
| MapMan:35.1 | InterPro:Bax_inhibitor_1-related | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008219 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0050832 |
| GO:GO:0060548 | UniProt:K4CVN6 | PFAM:PF01027 | PANTHER:PTHR23291 | PANTHER:PTHR23291:SF31 | EnsemblPlantsGene:Solyc09g082590.2 |
| EnsemblPlants:Solyc09g082590.2.1 | TMHMM:TMhelix | UniParc:UPI000276C15A | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:-:68326697..68329539
Molecular Weight (calculated)
26759.6 Da
IEP (calculated)
8.260
GRAVY (calculated)
0.919
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKQGGADIE SGNKGGVNGG QIYPGQMDDP QMRWAFIRKV YSIVCTQLFF TAIIATAMFF TPAVKHYMRT ILGKVTIIVL VIIAFILILL MGRYGKKHPW
101: NYLLMGIFTL CLACVVGAAC ALRAGETILI AAGLTVLITV SLTLYTFWAA SRGKDFTFLG PFLFCASIVL FMFILLQFLL DLGHEARVVY SCLAALLFSA
201: YLVYDTNNLI RNFTYDEYVI AAICLFGDIV NLFLALLGIS GE
101: NYLLMGIFTL CLACVVGAAC ALRAGETILI AAGLTVLITV SLTLYTFWAA SRGKDFTFLG PFLFCASIVL FMFILLQFLL DLGHEARVVY SCLAALLFSA
201: YLVYDTNNLI RNFTYDEYVI AAICLFGDIV NLFLALLGIS GE
001: MYKWNLPYRK DDVETGREGG ERSLYPTMLE SPELRWGFIR KVYSIIAFQL LATIAVASTV VFVRPIAVFF ATTSAGLALW IVLIITPLIV MCPLYYYHQK
101: HPVNYLLLGI FTVALAFAVG LTCAFTSGKV ILEAAILTTV VVLSLTVYTF WAAKKGYDFN FLGPFLFGAL IVLMVFALIQ IFFPLGRISV MIYGCLAAII
201: FCGYIVYDTD NLIKRYSYDE YIWAAVSLYL DIINLFLALL TIFRAAE
101: HPVNYLLLGI FTVALAFAVG LTCAFTSGKV ILEAAILTTV VVLSLTVYTF WAAKKGYDFN FLGPFLFGAL IVLMVFALIQ IFFPLGRISV MIYGCLAAII
201: FCGYIVYDTD NLIKRYSYDE YIWAAVSLYL DIINLFLALL TIFRAAE
Arabidopsis Description
LFG4Protein LIFEGUARD 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA63]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.