Factsheet for PGSC0003DMT400016496

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, golgi, peroxisome

Predictor Summary:

nucleus 1
golgi 3
extracellular 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14730.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT4G14730.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082590.2.1	Tomato	cytosol, golgi, peroxisome	94.63	94.63
PGSC0003DMT400049703	Potato	plasma membrane	46.69	46.69
PGSC0003DMT400051889	Potato	plasma membrane	45.45	44.9
GSMUA_Achr9P10630_001	Banana	plasma membrane	44.63	44.44
Os07t0177200-01	Rice	mitochondrion	40.08	43.5
KRG90848	Soybean	plasma membrane	43.39	43.39
Os03t0795600-01	Rice	plasma membrane	43.8	42.91
TraesCS5A01G437700.1	Wheat	plasma membrane	42.98	42.8
Zm00001d034431_P001	Maize	plasma membrane	43.8	42.57
AT4G14730.1	Thale cress	plasma membrane	41.32	42.55
TraesCS5B01G440500.1	Wheat	plasma membrane	42.56	41.87
GSMUA_Achr8P20490_001	Banana	peroxisome, plasma membrane, vacuole	42.15	41.8
TraesCS5D01G444900.1	Wheat	plasma membrane	42.15	41.63
VIT_05s0020g04030.t01	Wine grape	plasma membrane	38.02	41.63
KRH35929	Soybean	plasma membrane	41.32	41.49
CDY29762	Canola	plasma membrane	40.91	41.42
CDY16255	Canola	plasma membrane	40.91	41.42
EER90743	Sorghum	plasma membrane	42.15	41.3
Bra036891.1-P	Field mustard	plasma membrane	40.5	41.0
PGSC0003DMT400035266	Potato	peroxisome	38.43	38.43
Os11t0581900-01	Rice	plasma membrane	40.91	38.37
PGSC0003DMT400033268	Potato	plasma membrane	38.84	38.21
EES10004	Sorghum	peroxisome	39.67	35.42
Zm00001d052964_P002	Maize	plasma membrane	37.6	31.93

Protein Annotations

MapMan:35.1	InterPro:Bax_inhibitor_1-related	GO:GO:0005575	GO:GO:0006950	GO:GO:0008150	GO:GO:0008219
GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0050832
GO:GO:0060548	UniProt:M1A7R1	PFAM:PF01027	EnsemblPlantsGene:PGSC0003DMG400006443	PGSC:PGSC0003DMG400006443	EnsemblPlants:PGSC0003DMT400016496
PANTHER:PTHR23291	PANTHER:PTHR23291:SF31	TMHMM:TMhelix	UniParc:UPI0002967ACB	SEG:seg	:

Description

Transmembrane BAX inhibitor motif-containing protein 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400006443]

Coordinates

chr9:-:54359103..54362736

Molecular Weight (calculated)

26844.7 Da

IEP (calculated)

8.457

GRAVY (calculated)

0.905

Length

242 amino acids

Sequence
(BLAST)

001: MFKQGGADIE SGNKGGVNGG QIYPGQMEDP QMRWAFIRKV YSIVCTQLFF TAVIATVMFF TPAVKHYMRT ILGRVTVIVL LVIAFILIFL MGRYGKKHPW
101: NYLLMGVFTL CLACVVGAAC ALRAGETILI AAGLTVLITV SLTLYTFWAA SRGKDFSFLG PFLFCASIVL FMFILMQFIL DLGREARVVY SCLAALLFSA
201: YLVYDTNNLI RNFTYDEYVI AAICLFGDIV NLFLALLGIS GE

Best Arabidopsis Sequence Match ( AT1G03070.2 )
(BLAST)

001: MYKWNLPYRK DDVETGREGG ERSLYPTMLE SPELRWGFIR KVYSIIAFQL LATIAVASTV VFVRPIAVFF ATTSAGLALW IVLIITPLIV MCPLYYYHQK
101: HPVNYLLLGI FTVALAFAVG LTCAFTSGKV ILEAAILTTV VVLSLTVYTF WAAKKGYDFN FLGPFLFGAL IVLMVFALIQ IFFPLGRISV MIYGCLAAII
201: FCGYIVYDTD NLIKRYSYDE YIWAAVSLYL DIINLFLALL TIFRAAE

Arabidopsis Description

LFG4Protein LIFEGUARD 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA63]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.