CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14730.1	KRH11076	AT4G19030.1	21798944
AT4G14730.1	KRH21197	AT4G19030.1	21798944
AT4G14730.1	KRH42923	AT4G19030.1	21798944
AT4G14730.1	KRH42926	AT4G19030.1	21798944
AT4G14730.1	KRH45251	AT4G19030.1	21798944
AT4G14730.1	KRH59035	AT4G19030.1	21798944
AT4G14730.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35929	Soybean	plasma membrane	91.74	92.12
VIT_05s0020g04030.t01	Wine grape	plasma membrane	48.35	52.94
CDY16255	Canola	plasma membrane	48.76	49.37
CDY29762	Canola	plasma membrane	48.76	49.37
AT4G14730.1	Thale cress	plasma membrane	47.93	49.36
Bra036891.1-P	Field mustard	plasma membrane	48.35	48.95
GSMUA_Achr9P10630_001	Banana	plasma membrane	48.76	48.56
KRH32057	Soybean	plasma membrane	47.93	47.93
KRH67263	Soybean	extracellular	12.81	46.97
EER90743	Sorghum	plasma membrane	47.93	46.96
KRG95577	Soybean	plasma membrane	47.11	46.91
GSMUA_Achr8P20490_001	Banana	peroxisome, plasma membrane, vacuole	46.69	46.31
Os03t0795600-01	Rice	plasma membrane	46.28	45.34
TraesCS5A01G437700.1	Wheat	plasma membrane	45.45	45.27
KRH11337	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	45.87	45.12
Zm00001d034431_P001	Maize	plasma membrane	46.28	44.98
KRH20943	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	45.45	44.72
TraesCS5D01G444900.1	Wheat	plasma membrane	45.04	44.49
TraesCS5B01G440500.1	Wheat	plasma membrane	45.04	44.31
PGSC0003DMT400016496	Potato	cytosol, golgi, peroxisome	43.39	43.39
Os07t0177200-01	Rice	mitochondrion	39.67	43.05
Solyc09g082590.2.1	Tomato	cytosol, golgi, peroxisome	42.56	42.56
KRH71378	Soybean	mitochondrion	48.35	41.34
Os11t0581900-01	Rice	plasma membrane	42.15	39.53
EES10004	Sorghum	peroxisome	41.32	36.9
Zm00001d052964_P002	Maize	plasma membrane	40.08	34.04

Protein Annotations

EMBL:ACUP02012647	EnsemblPlants:KRG90848	EnsemblPlantsGene:GLYMA_20G117300	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Bax_inhibitor_1-related	PANTHER:PTHR23291	PANTHER:PTHR23291:SF31	PFAM:PF01027	ProteinID:KRG90848	ProteinID:KRG90848.1
TMHMM:TMhelix	UniParc:UPI000233F326	UniProt:I1NFL0	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr20:+:35992923..35995078

Molecular Weight (calculated)

27370.1 Da

IEP (calculated)

7.274

GRAVY (calculated)

0.922

Length

242 amino acids

Sequence
(BLAST)

001: MGRGDIEAGL PHAEGGDALY PYMIESPQLR WGFIRKVYVI ISLQLLFTAA FSSLFIFFTP ARNFARYNQY RIWVFIGAAI LSFILLFVLS KYYKKHPVNL
101: LLLGLYTLCM SVTVGFACSF VDATIVLEAA FLTGVVTASL TFYTFWAVKR GSDFSFLGPF LFASLMVMLL FALIQVFYPL GPIGRMVIAC IGAIVMCGFI
201: VYDTDDLIKR YTYDDYIWAA IAIYGDIINL FIYLLTILND LF

Best Arabidopsis Sequence Match ( AT1G03070.1 )
(BLAST)

001: MYKWNLPYRK DDVETGREGG ERSLYPTMLE SPELRWGFIR KVYSIIAFQL LATIAVASTV VFVRPIAVFF ATTSAGLALW IVLIITPLIV MCPLYYYHQK
101: HPVNYLLLGI FTVALAFAVG LTCAFTSGKV ILEAAILTTV VVLSLTVYTF WAAKKGYDFN FLGPFLFGAL IVLMVFALIQ IFFPLGRISV MIYGCLAAII
201: FCGYIVYDTD NLIKRYSYDE YIWAAVSLYL DIINLFLALL TIFRAAE

Arabidopsis Description

LFG4Protein LIFEGUARD 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA63]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.