Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033299.1-P | Field mustard | nucleus | 90.84 | 90.84 |
| CDY15220 | Canola | nucleus | 68.13 | 84.65 |
| CDY55326 | Canola | nucleus | 54.98 | 57.02 |
| CDY32449 | Canola | nucleus | 46.61 | 52.23 |
| CDY32450 | Canola | nucleus | 45.02 | 50.45 |
| CDY55325 | Canola | nucleus | 49.4 | 48.82 |
| CDY15223 | Canola | nucleus | 40.24 | 47.64 |
| CDY11741 | Canola | nucleus | 23.51 | 42.45 |
| CDX90132 | Canola | nucleus | 20.72 | 42.28 |
| CDX89991 | Canola | nucleus | 44.22 | 41.26 |
| AT1G02250.1 | Thale cress | nucleus | 52.19 | 36.19 |
| AT1G02230.1 | Thale cress | nucleus | 47.41 | 33.15 |
| CDX89995 | Canola | nucleus | 46.22 | 32.68 |
| AT3G04420.1 | Thale cress | nucleus | 41.04 | 30.12 |
| CDY15210 | Canola | cytosol, nucleus, plastid | 30.28 | 29.34 |
| CDX89990 | Canola | nucleus | 44.22 | 28.03 |
| CDY15218 | Canola | nucleus | 40.64 | 27.95 |
| CDY15214 | Canola | nucleus | 31.87 | 27.03 |
| CDY59815 | Canola | cytosol | 27.49 | 25.84 |
| CDY15224 | Canola | cytosol | 37.05 | 24.87 |
| KRH06324 | Soybean | cytosol | 25.9 | 24.34 |
| AT1G02220.1 | Thale cress | nucleus | 37.05 | 23.6 |
| CDY15225 | Canola | nucleus | 37.45 | 23.56 |
| CDY07138 | Canola | nucleus | 26.69 | 23.26 |
| CDY15221 | Canola | cytosol, nucleus, peroxisome | 37.85 | 22.35 |
| CDX89993 | Canola | nucleus | 39.44 | 21.2 |
| CDY07135 | Canola | nucleus | 30.28 | 20.49 |
| KRH47750 | Soybean | cytosol | 25.1 | 20.45 |
| CDX89996 | Canola | nucleus | 20.32 | 19.77 |
| CDY15215 | Canola | nucleus | 31.47 | 18.59 |
| CDX97252 | Canola | cytosol | 30.68 | 18.03 |
| CDY15212 | Canola | nucleus | 29.88 | 17.65 |
| CDY07136 | Canola | cytosol | 29.88 | 17.61 |
| CDY59814 | Canola | cytosol | 29.48 | 17.41 |
| Os06t0101800-01 | Rice | nucleus | 24.7 | 17.27 |
| CDY59812 | Canola | cytosol | 30.68 | 17.07 |
| CDX89999 | Canola | nucleus | 31.08 | 16.42 |
| KRH06327 | Soybean | cytosol | 25.5 | 16.0 |
| CDY01928 | Canola | cytosol, nucleus, vacuole | 30.68 | 15.84 |
| CDY15217 | Canola | nucleus | 21.51 | 15.47 |
| KRH47748 | Soybean | cytosol | 24.3 | 15.06 |
| KRH06326 | Soybean | nucleus | 24.7 | 14.39 |
| HORVU7Hr1G000910.1 | Barley | nucleus | 26.29 | 12.45 |
| TraesCS7A01G000300.1 | Wheat | nucleus | 25.9 | 12.31 |
| KRH47747 | Soybean | nucleus | 24.3 | 12.27 |
| TraesCS4A01G499900.1 | Wheat | plastid | 27.09 | 11.81 |
| TraesCS7D01G000200.1 | Wheat | plastid | 25.5 | 11.41 |
| Zm00001d045617_P001 | Maize | nucleus, plasma membrane, vacuole | 25.5 | 10.47 |
| EER87676 | Sorghum | plastid | 26.29 | 10.23 |
| CDY07137 | Canola | extracellular, plasma membrane | 6.77 | 5.41 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078DNA8 | EnsemblPlants:CDX89994 | ProteinID:CDX89994 | ProteinID:CDX89994.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150492001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF57 | SUPFAM:SSF101941 | UniParc:UPI0004EDD5FC | : | : | : |
Description
BnaA10g00880D
Coordinates
chrLK031861:+:1151280..1152319
Molecular Weight (calculated)
28664.8 Da
IEP (calculated)
8.753
GRAVY (calculated)
-0.808
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MENMVGLRFL PTDEELVDHY LRLKNHGGSN TSPVDQVIST INICNFDPWE LPRHSSMESK DQVWYFFGRK EKRYNRGERQ IRKTKSGFWK KTGVTMDIKR
101: KRSAHREKIG EKRVLVFHSG GSKTNWIMHE YDAACLSPTQ NMTYTICKVH KKGEAREIYS PGSGIDAHTL SLVTHMNNSG GESSPAASEK PKNAHQLSGF
201: SDKKQETELE EAIHGAFDNL SSYDWKYLLD DAEQSKTVAM QKSLTGFLDW A
101: KRSAHREKIG EKRVLVFHSG GSKTNWIMHE YDAACLSPTQ NMTYTICKVH KKGEAREIYS PGSGIDAHTL SLVTHMNNSG GESSPAASEK PKNAHQLSGF
201: SDKKQETELE EAIHGAFDNL SSYDWKYLLD DAEQSKTVAM QKSLTGFLDW A
001: MENPVGLRFR PTDKEIVVDY LRPKNSDRDT SHVDRVISTV TIRSFDPWEL PCQSRIKLKD ESWCFFSPKE NKYGRGDQQI RKTKSGYWKI TGKPKPILRN
101: RQEIGEKKVL MFYMSKELGG SKSDWVMHEY HAFSPTQMMM TYTICKVMFK GDVREISSSS ASYGSEIEQS RDSLIPLLVN DSEEEAQIED AIPIEEWETW
201: LTDDGVDEQV NHIMNMKDDR NNHRPQKPLT GVLIDDSSDD DDDSDLLSPT TNSIENSSTC DSFGSSDQIN LVSLTQEVSF ILSLFFSDTN NP
101: RQEIGEKKVL MFYMSKELGG SKSDWVMHEY HAFSPTQMMM TYTICKVMFK GDVREISSSS ASYGSEIEQS RDSLIPLLVN DSEEEAQIED AIPIEEWETW
201: LTDDGVDEQV NHIMNMKDDR NNHRPQKPLT GVLIDDSSDD DDDSDLLSPT TNSIENSSTC DSFGSSDQIN LVSLTQEVSF ILSLFFSDTN NP
Arabidopsis Description
anac048At3g04420/T27C4_6 [Source:UniProtKB/TrEMBL;Acc:Q8W4R4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.