Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G02220.1 | Thale cress | nucleus | 66.37 | 57.61 |
| CDY55326 | Canola | nucleus | 32.46 | 45.87 |
| AT1G02230.1 | Thale cress | nucleus | 46.49 | 44.29 |
| CDY15220 | Canola | nucleus | 26.02 | 44.06 |
| AT1G02210.1 | Thale cress | cytosol, nucleus, plastid | 10.82 | 42.53 |
| CDY15223 | Canola | nucleus | 26.32 | 42.45 |
| AT1G02250.1 | Thale cress | nucleus | 44.74 | 42.27 |
| CDY55325 | Canola | nucleus | 30.7 | 41.34 |
| CDX89994 | Canola | nucleus | 30.12 | 41.04 |
| CDY32449 | Canola | nucleus | 26.02 | 39.73 |
| Bra033299.1-P | Field mustard | nucleus | 28.36 | 38.65 |
| Bra033303.1-P | Field mustard | nucleus | 42.98 | 38.28 |
| CDY11741 | Canola | nucleus | 15.5 | 38.13 |
| CDY32450 | Canola | nucleus | 24.85 | 37.95 |
| Bra032615.1-P | Field mustard | nucleus | 24.56 | 37.5 |
| CDX90132 | Canola | nucleus | 13.16 | 36.59 |
| Bra010895.1-P | Field mustard | nucleus | 13.16 | 36.59 |
| Bra033302.1-P | Field mustard | nucleus | 27.49 | 36.15 |
| Bra033308.1-P | Field mustard | nucleus | 41.23 | 35.61 |
| CDX89990 | Canola | nucleus | 41.23 | 35.61 |
| CDX89991 | Canola | nucleus | 26.9 | 34.2 |
| CDX89995 | Canola | nucleus | 35.38 | 34.08 |
| CDY15221 | Canola | cytosol, nucleus, peroxisome | 41.81 | 33.65 |
| Bra033298.1-P | Field mustard | nucleus | 35.67 | 32.62 |
| CDY15225 | Canola | nucleus | 37.43 | 32.08 |
| Bra033300.1-P | Field mustard | nucleus | 42.4 | 31.59 |
| Bra033305.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 25.73 | 31.21 |
| CDX89993 | Canola | nucleus | 42.4 | 31.05 |
| CDY15218 | Canola | nucleus | 32.75 | 30.68 |
| CDY15224 | Canola | cytosol | 30.41 | 27.81 |
| Bra033306.1-P | Field mustard | nucleus | 28.66 | 25.52 |
| AT3G04430.1 | Thale cress | nucleus | 13.45 | 23.23 |
| KRH06324 | Soybean | cytosol | 18.13 | 23.22 |
| AT1G01010.1 | Thale cress | nucleus | 27.19 | 21.68 |
| AT4G01520.1 | Thale cress | nucleus | 19.01 | 21.52 |
| AT4G01550.1 | Thale cress | cytosol, golgi, nucleus | 26.9 | 20.13 |
| Os06t0101800-01 | Rice | nucleus | 20.47 | 19.5 |
| KRH47750 | Soybean | cytosol | 17.54 | 19.48 |
| AT4G01540.1 | Thale cress | cytosol | 25.73 | 18.6 |
| KRH06327 | Soybean | cytosol | 21.05 | 18.0 |
| KRH47748 | Soybean | cytosol | 20.76 | 17.53 |
| KRH06326 | Soybean | nucleus | 20.18 | 16.01 |
| HORVU7Hr1G000910.1 | Barley | nucleus | 21.64 | 13.96 |
| KRH47747 | Soybean | nucleus | 19.59 | 13.48 |
| TraesCS7A01G000300.1 | Wheat | nucleus | 19.88 | 12.88 |
| TraesCS7D01G000200.1 | Wheat | plastid | 19.3 | 11.76 |
| TraesCS4A01G499900.1 | Wheat | plastid | 19.3 | 11.46 |
| Zm00001d045617_P001 | Maize | nucleus, plasma membrane, vacuole | 20.18 | 11.29 |
| EER87676 | Sorghum | plastid | 20.47 | 10.85 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EntrezGene:819597 | ProteinID:AEE74079.1 | ArrayExpress:AT3G04420 | EnsemblPlantsGene:AT3G04420 |
| RefSeq:AT3G04420 | TAIR:AT3G04420 | RefSeq:AT3G04420-TAIR-G | EnsemblPlants:AT3G04420.1 | TAIR:AT3G04420.1 | EMBL:AY060587 |
| Unigene:At.27362 | EMBL:BT000846 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | RefSeq:NP_566226.1 | PFAM:PF02365 |
| PO:PO:0000293 | PO:PO:0009047 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF58 | UniProt:Q8W4R4 |
| SUPFAM:SSF101941 | UniParc:UPI00000AC6E9 | Symbol:anac048 | SEG:seg | : | : |
Description
anac048At3g04420/T27C4_6 [Source:UniProtKB/TrEMBL;Acc:Q8W4R4]
Coordinates
chr3:+:1172687..1174508
Molecular Weight (calculated)
39039.8 Da
IEP (calculated)
5.087
GRAVY (calculated)
-0.765
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPVGLRFR PTDKEIVVDY LRPKNSDRDT SHVDRVISTV TIRSFDPWEL PCQSRIKLKD ESWCFFSPKE NKYGRGDQQI RKTKSGYWKI TGKPKPILRN
101: RQEIGEKKVL MFYMSKELGG SKSDWVMHEY HAFSPTQMMM TYTICKVMFK GDVREISSSS ASYGSEIEQS RDSLIPLLVN DSEEEAQIED AIPIEEWETW
201: LTDDGVDEQV NHIMNMKDDR NNHRPQKPLT GVLIDDSSDD DDDSDLLSPT TNSIENSSTC DSFGSSDQIN LVSLTQEVSQ ALITSIDTPE KIKSPYDDAQ
301: GTGAGGQKLG QETREKKRAG FFHRMIQIFV KKIHQCSSIS RT
101: RQEIGEKKVL MFYMSKELGG SKSDWVMHEY HAFSPTQMMM TYTICKVMFK GDVREISSSS ASYGSEIEQS RDSLIPLLVN DSEEEAQIED AIPIEEWETW
201: LTDDGVDEQV NHIMNMKDDR NNHRPQKPLT GVLIDDSSDD DDDSDLLSPT TNSIENSSTC DSFGSSDQIN LVSLTQEVSQ ALITSIDTPE KIKSPYDDAQ
301: GTGAGGQKLG QETREKKRAG FFHRMIQIFV KKIHQCSSIS RT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.