Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- golgi 2
- extracellular 2
- nucleus 1
- vacuole 1
- plasma membrane 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G02230.1 | Thale cress | nucleus | 45.98 | 11.14 |
| AT3G04420.1 | Thale cress | nucleus | 42.53 | 10.82 |
| AT3G04430.1 | Thale cress | nucleus | 22.99 | 10.1 |
| AT1G02250.1 | Thale cress | nucleus | 41.38 | 9.94 |
| AT4G01520.1 | Thale cress | nucleus | 34.48 | 9.93 |
| KRH06324 | Soybean | cytosol | 29.89 | 9.74 |
| KRH47750 | Soybean | cytosol | 31.03 | 8.77 |
| AT1G01010.1 | Thale cress | nucleus | 39.08 | 7.93 |
| AT1G02220.1 | Thale cress | nucleus | 33.33 | 7.36 |
| Os06t0101800-01 | Rice | nucleus | 29.89 | 7.24 |
| KRH47748 | Soybean | cytosol | 32.18 | 6.91 |
| KRH06327 | Soybean | cytosol | 31.03 | 6.75 |
| KRH06326 | Soybean | nucleus | 33.33 | 6.73 |
| AT4G01540.1 | Thale cress | cytosol | 35.63 | 6.55 |
| AT4G01550.1 | Thale cress | cytosol, golgi, nucleus | 33.33 | 6.35 |
| KRH47747 | Soybean | nucleus | 29.89 | 5.23 |
| TraesCS7A01G000300.1 | Wheat | nucleus | 31.03 | 5.11 |
| HORVU7Hr1G000910.1 | Barley | nucleus | 29.89 | 4.91 |
| TraesCS7D01G000200.1 | Wheat | plastid | 31.03 | 4.81 |
| TraesCS4A01G499900.1 | Wheat | plastid | 31.03 | 4.69 |
| Zm00001d045617_P001 | Maize | nucleus, plasma membrane, vacuole | 32.18 | 4.58 |
| EER87676 | Sorghum | plastid | 31.03 | 4.19 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EntrezGene:839482 | ProteinID:AEE27403.1 | ArrayExpress:AT1G02210 | EnsemblPlantsGene:AT1G02210 |
| RefSeq:AT1G02210 | TAIR:AT1G02210 | RefSeq:AT1G02210-TAIR-G | EnsemblPlants:AT1G02210.1 | TAIR:AT1G02210.1 | Unigene:At.65873 |
| EMBL:BT029354 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | RefSeq:NP_171724.1 | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF109 | UniProt:Q3E7L2 | SUPFAM:SSF101941 | UniParc:UPI0000162C02 | : | : |
Description
At1g02210 [Source:UniProtKB/TrEMBL;Acc:Q3E7L2]
Coordinates
chr1:-:427548..427811
Molecular Weight (calculated)
10247.2 Da
IEP (calculated)
4.951
GRAVY (calculated)
-0.234
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MVWFFFSCDE YNEEILKTNS GYWKETVSNT PIIGKWITSN GVKIGEKQVL VFQSYENING SKSDWVMHVY QPTFLPPNQV IFRIYDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.