Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15210 | Canola | cytosol, nucleus, plastid | 53.04 | 60.62 |
| CDY11741 | Canola | nucleus | 16.89 | 35.97 |
| AT1G01010.1 | Thale cress | nucleus | 50.68 | 34.97 |
| CDX90132 | Canola | nucleus | 14.19 | 34.15 |
| CDY15223 | Canola | nucleus | 24.32 | 33.96 |
| CDY15220 | Canola | nucleus | 22.97 | 33.66 |
| CDY55326 | Canola | nucleus | 27.36 | 33.47 |
| CDX89994 | Canola | nucleus | 27.03 | 31.87 |
| CDY32449 | Canola | nucleus | 23.65 | 31.25 |
| CDY32450 | Canola | nucleus | 22.97 | 30.36 |
| CDX89991 | Canola | nucleus | 27.03 | 29.74 |
| CDY55325 | Canola | nucleus | 25.34 | 29.53 |
| CDY59815 | Canola | cytosol | 26.01 | 28.84 |
| CDY15215 | Canola | nucleus | 40.88 | 28.47 |
| CDY07138 | Canola | nucleus | 25.68 | 26.39 |
| CDY15212 | Canola | nucleus | 37.84 | 26.35 |
| KRH06324 | Soybean | cytosol | 22.97 | 25.47 |
| CDY07135 | Canola | nucleus | 30.07 | 23.99 |
| CDX89999 | Canola | nucleus | 38.18 | 23.79 |
| CDX89996 | Canola | nucleus | 20.27 | 23.26 |
| CDX89995 | Canola | nucleus | 27.03 | 22.54 |
| CDY59814 | Canola | cytosol | 30.74 | 21.41 |
| CDY07136 | Canola | cytosol | 30.74 | 21.36 |
| CDX89990 | Canola | nucleus | 28.04 | 20.96 |
| CDY15221 | Canola | cytosol, nucleus, peroxisome | 30.07 | 20.94 |
| CDX97252 | Canola | cytosol | 30.07 | 20.84 |
| KRH47750 | Soybean | cytosol | 21.62 | 20.78 |
| CDY15224 | Canola | cytosol | 25.68 | 20.32 |
| CDX89993 | Canola | nucleus | 31.08 | 19.7 |
| CDY59812 | Canola | cytosol | 29.73 | 19.51 |
| CDY15218 | Canola | nucleus | 23.99 | 19.45 |
| KRH06327 | Soybean | cytosol | 25.68 | 19.0 |
| CDY15217 | Canola | nucleus | 21.96 | 18.62 |
| CDY15225 | Canola | nucleus | 25.0 | 18.55 |
| CDY01928 | Canola | cytosol, nucleus, vacuole | 30.41 | 18.52 |
| Os06t0101800-01 | Rice | nucleus | 22.3 | 18.38 |
| KRH47748 | Soybean | cytosol | 24.66 | 18.02 |
| KRH06326 | Soybean | nucleus | 26.01 | 17.87 |
| KRH47747 | Soybean | nucleus | 24.66 | 14.69 |
| TraesCS7A01G000300.1 | Wheat | nucleus | 24.66 | 13.83 |
| TraesCS7D01G000200.1 | Wheat | plastid | 23.99 | 12.66 |
| HORVU7Hr1G000910.1 | Barley | nucleus | 21.62 | 12.08 |
| TraesCS4A01G499900.1 | Wheat | plastid | 23.31 | 11.98 |
| Zm00001d045617_P001 | Maize | nucleus, plasma membrane, vacuole | 20.61 | 9.98 |
| EER87676 | Sorghum | plastid | 20.27 | 9.3 |
| CDY07137 | Canola | extracellular, plasma membrane | 7.77 | 7.32 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078FQS0 | UniProt:A0A078FQS0 | EnsemblPlants:CDY15214 | ProteinID:CDY15214 |
| ProteinID:CDY15214.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00085406001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF57 | SUPFAM:SSF101941 | UniParc:UPI0004EDDE1B | SEG:seg | : | : |
Description
BnaC05g00930DBnaC05g00930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQS0]
Coordinates
chrLK032052:-:509232..510470
Molecular Weight (calculated)
33847.9 Da
IEP (calculated)
4.897
GRAVY (calculated)
-0.650
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDVVGFGFR PTDEELVGYY LHNKILGNDW LVQELINEVN ISNFDPWNLR FQSKVKSRDL VWYFFSRRGS NGDRQNRKTS SGFWKITGDP VEVKDQWGTW
101: CGVKGKIGYK RVLVFRRGKS SSSQSTKSDW VMHEYHYTLL PQDQRTHVIC RLEYKGQDMS ILSANPTEPL PTFFPNVTNS AASDSVVNQS VQGNSASFNT
201: FSDYDSANQG QWFSEDFNLH QPVVSYDDGD TQRIWDYVVE KNFSQYRPKK PVTVVSVDDS SDADNTDTES TTVCNVNSGF NGLESDQNCQ VMFAFV
101: CGVKGKIGYK RVLVFRRGKS SSSQSTKSDW VMHEYHYTLL PQDQRTHVIC RLEYKGQDMS ILSANPTEPL PTFFPNVTNS AASDSVVNQS VQGNSASFNT
201: FSDYDSANQG QWFSEDFNLH QPVVSYDDGD TQRIWDYVVE KNFSQYRPKK PVTVVSVDDS SDADNTDTES TTVCNVNSGF NGLESDQNCQ VMFAFV
001: MEDQVGFGFR PNDEELVGHY LRNKIEGNTS RDVEVAISEV NICSYDPWNL RFQSKYKSRD AMWYFFSRRE NNKGNRQSRT TVSGKWKLTG ESVEVKDQWG
101: FCSEGFRGKI GHKRVLVFLD GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS SAGSVVNQSR QRNSGSYNTY
201: SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS
301: GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL
401: ENAQWNYLKN MIIGVLLFIS VISWIILVG
101: FCSEGFRGKI GHKRVLVFLD GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS SAGSVVNQSR QRNSGSYNTY
201: SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS
301: GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL
401: ENAQWNYLKN MIIGVLLFIS VISWIILVG
Arabidopsis Description
NAC001NAC domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.