CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 8
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX92368
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43460.1	CDX67837	AT3G60600.1	21798944
AT5G43460.1	CDX71796	AT3G60600.1	21798944
AT5G43460.1	CDX89063	AT3G60600.1	21798944
AT5G43460.1	CDY41153	AT3G60600.1	21798944
AT5G43460.1	CDY48365	AT3G60600.1	21798944
AT5G43460.1	CDX70995	AT5G22290.1	21798944
AT5G43460.1	CDX88803	AT5G22290.1	21798944
AT5G43460.1	CDX92368	AT5G22290.1	21798944
AT5G43460.1	CDY09128	AT5G22290.1	21798944
AT5G43460.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027498.1-P	Field mustard	plasma membrane	100.0	100.0
CDY59304	Canola	plasma membrane	96.82	96.82
AT5G43460.1	Thale cress	extracellular	84.71	86.36
CDY60669	Canola	extracellular, plasma membrane, vacuole	87.26	84.57
CDY18220	Canola	extracellular, plasma membrane, vacuole	86.62	83.95
CDY15499	Canola	plasma membrane	85.35	81.21
CDX86640	Canola	extracellular, plasma membrane, vacuole	84.08	80.49
VIT_05s0049g00200.t01	Wine grape	extracellular	60.51	60.51
CDY10063	Canola	plasma membrane	68.79	59.67
KRH31721	Soybean	endoplasmic reticulum	59.24	59.24
KRG92302	Soybean	extracellular	59.24	59.24
KRG90387	Soybean	extracellular	59.24	59.24
KRH34500	Soybean	extracellular	57.96	57.96
TraesCS4A01G415500.1	Wheat	extracellular	56.05	56.05
Solyc06g053660.2.1	Tomato	plasma membrane	56.05	56.05
CDY12771	Canola	extracellular	54.78	55.13
CDY49421	Canola	extracellular	54.78	55.13
CDY47153	Canola	endoplasmic reticulum	55.41	55.06
GSMUA_Achr2P04100_001	Banana	extracellular	55.41	55.06
CDY12466	Canola	endoplasmic reticulum	55.41	55.06
HORVU4Hr1G080140.1	Barley	extracellular	54.78	54.78
Os03t0149200-01	Rice	extracellular	54.78	54.78
TraesCS4D01G312900.1	Wheat	extracellular	54.78	54.78
GSMUA_Achr4P26720_001	Banana	extracellular	54.14	54.49
TraesCS4B01G316300.1	Wheat	extracellular	54.14	54.14
GSMUA_Achr1P01370_001	Banana	extracellular	53.5	53.85
Os04t0181100-01	Rice	plasma membrane	53.5	53.5
OQU81217	Sorghum	extracellular	52.87	52.87
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	52.87	52.87
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	36.31	52.78
Os10t0445500-01	Rice	plasma membrane	52.87	52.53
EER92848	Sorghum	extracellular	52.23	52.23
GSMUA_Achr8P14320_001	Banana	plasma membrane	52.23	51.9
TraesCS2D01G029000.1	Wheat	extracellular	51.59	51.59
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	51.59	51.59
TraesCS2B01G040200.1	Wheat	extracellular	50.96	50.96
TraesCS2A01G026900.1	Wheat	extracellular	50.96	50.96
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	51.59	49.39
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	36.94	46.77
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	46.5	45.62
KRH73866	Soybean	plastid	35.03	36.91
PGSC0003DMT400042097	Potato	cytosol	44.59	35.9
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	52.23	33.88

Protein Annotations

EnsemblPlants:CDY32939	EnsemblPlantsGene:GSBRNA2T00053139001	GO:A0A078H621	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF4	PFAM:PF05514	ProteinID:CDY32939	ProteinID:CDY32939.1
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000182B6E5	UniProt:A0A078H621	MapMan:35.2	:

Description

BnaA09g16540DBnaA09g16540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H621]

Coordinates

chrLK032303:-:117309..118707

Molecular Weight (calculated)

17147.3 Da

IEP (calculated)

10.264

GRAVY (calculated)

0.579

Length

157 amino acids

Sequence
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGVD GGPAATELAP KLHLAKSHLS SRLGVTLPSV EVKQVVAAIV ALKGVGGLLF VIGNIFGAYL LAFYLVVVSP
101: ILYDFYNYGP EERHFSPLLT EFLQSVALFG ALLFFIGMKN STPTKRNLKR TPKPKAA

Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA

Arabidopsis Description

At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.